AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli1g00154 ATGCATCTTCTCCTTCACCCTTCTCCAACCCTCTGTTCTTACTCCAACCACTGTCCTCCGCCGCACCGCCACCACCAATTCCGAACAACCCACCGGAATAACCTTCGATACCTCAAATCGATCGGCATCATCCCACCGGAATCCACCACCACCCCCTCTCCAACCACCGTCTCTCACATCCTCTCAACCATCAACTTCTTCAAATCCAAAGGCTTCTCAGAACCCGACTTCACCCGAATCGCTTATCTCTCGCCACATATCTTCGCTCTATCTTACAATCCCGAATCCATCGAGCCAGTTTTCGAATTCTTAACGGTCGAATTAGCTGCCTCAGTGGAGGATATCCGTGGGTTGATTATCAAATGCCCTCACATTCTTGAATCAGACCCTGAATTCTGCTTAAAACCGACACTCGAGTACCTTAAAAGCTTGGGGATTAAGGGGTTGAACAATCCCACAACTTTGAATGCTCATTTACTGAACACAAGAGTGCATAAGTTTGAAGAGAAGATGGGATTTTTGCATGGATTTGGGTTCTCTGAGGCCGAATCGAGGCGAATTTGTGGGCGGTTTCCGGCGATATTTGGGTATGGGATTATGAACAATTTGAGGCCAAAGTTTGTGTATTTGGTGAGGGAGATGAAGAGGAATGGTAGGGAGGAAGTGTGCAAGTTTCCACAGTATTTTGGGTTCAGTTTGGAGAAGAGGATAAAGGTTAGACATTTGCATTTGAAACAGAGGAATGTTGATGGTGAGGTGCCTTTGAATAGGATGTTGTTGTGGAGTGATGAGAGGTTTTTCAAGAAATGGAAATGA 816 45.96 MHLLLHPSPTLCSYSNHCPPPHRHHQFRTTHRNNLRYLKSIGIIPPESTTTPSPTTVSHILSTINFFKSKGFSEPDFTRIAYLSPHIFALSYNPESIEPVFEFLTVELAASVEDIRGLIIKCPHILESDPEFCLKPTLEYLKSLGIKGLNNPTTLNAHLLNTRVHKFEEKMGFLHGFGFSEAESRRICGRFPAIFGYGIMNNLRPKFVYLVREMKRNGREEVCKFPQYFGFSLEKRIKVRHLHLKQRNVDGEVPLNRMLLWSDERFFKKWK 271
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli1g00154 271 Pfam mTERF 93 266 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Fli1g00154 271 SMART mt-12 78 111 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Fli1g00154 271 SMART mt-12 185 217 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Fli1g00154 271 SMART mt-12 219 250 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Fli1g00154 271 SMART mt-12 116 147 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Fli1g00154 271 SMART mt-12 152 180 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Fli1g00154 271 PANTHER CGI-12 PROTEIN-RELATED 59 269 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Fli1g00154 271 Gene3D Transcription termination factor 3, mitochondrial 31 271 IPR038538 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli1g00154 K15031 mitochondrial transcription termination factor family protein
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr17:48666434 Fli1g00154 Fli-Chr1:3073403 dispersed
Fli Fli-Chr1:3073403 Fli2g02754 Fli-Chr2:56411646 transposed
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fli mTERF 1e-32 No_clan TR mTERF