AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli1g00175 ATGATCATACAGTTGTCAAAGATGGGTACTCTATGCAAATCAAGCTTGATCTTGTTGTTCATTTGGTATTTTCTCGCGCCTACTGCGTATTCGGGTCCTAATGATGGGTTGGTTAGAGTTGGACTCAAGAAGAGGAAAATCAACCAATTGAACCAAATTGGACATATTGGCTCTAATGAAGGGAATGCTGGAAGAAATTACGGTTTTCGTGGTAGTTTTAGGGATTCCGGAGGTGATGTTATTGCTCTAAACAACTTCATGGATGCTCAGTATTACGGTGAGATTGGTATTGGTACTCCACCTCAGAAGTTTACTGTGATATTTGACACTGGTAGTTCTAATCTGTGGGTGCCTTCAACAAAGTGCTACTTCTCAGCAGCATGCTTTCTTCACTCAAAGTATAAGTCTAGCCAGTCAAGTTCCTATAAGAAAAATGGGAAATCTGCTGCAATTCAATATGGAACTGGCTCTATCTCTGGTTTCTTCAGCCAAGATTTAATCACACTTGGTGATCTTGTTGTGAAAGAGCAAGATTTTATAGAGGCAACCAAAGAGCCCGGTGTCACTTTCGTAGCAGCCAAGTTTGATGGTATACTTGGCCTTGGGTTTCAAGAAATCTCCGTCGGGGATGCTGTTCCTGTTTGGTACAACATGCTTAAACAAAGTCTTGTTCAAAAACCTGTATTTTCATTTTGGCTTAATCGCAAGTCTGATGAAGACGAAGGGGGTGAGCTTGTGTTTGGTGGGGTTGACCATAATCATTTCAAGGGTAAACACACATTTGTCCCTGTAACTCAGAAAGGCTATTGGCAGTTTGATATGGGTGATGTCTTGATTGGTGATAACACAACTGGATTTTGCGCCACTGGTTGTGCGGCAATTGCTGATTCTGGAACCTCTTTGGTGGCTGGTCCAACGGGTGTTATTACCCAAATCAATCAAGCCATTGGTGCTGCTGGTGTTGTGAACCAACAATGCAAGACGTTCGTTAATCAATATGGAAAAACTATACTTGAGATGCTACTATATGAGACACAACCTAAAAGAATCTGCTCTGAGATGAAGTTATGCTCCTTTGATAGTTCTCATGATACTAGCATGATAATTGAGAGTGTGGTCGACAAGAATGATGGAAAATCATCTGGTGTACATAATGAGATGTGCACTCTCTGCGAGATGGCTGTTGTTTGGATGGAAACCAAAATACAGCGAAATGAAAGTGAAGATGAAATAATCAACCATGTTGATCAGCTTTGTGAACGGTTGCCAAATCCACTGGGAGAATCTGGAGTTGATTGCAATAGTCTTTCATCCATGCCCACTATTGCTTTTACCATTGGTGGTAAAACTTTTGACCTCTCCCCTGAAGAGTATATCATAAAAGTTGGTGAGGGAGTAGCAGCACAATGCATCAGTGGATTTACTGCTCTTGATGTGGCACCTCCTCGTGGGCCCCTGTGGATCCTGGGAGATATTTTTATGGGTAAATACCATACGGTGTTCGACTATGGTAAATTACGAGTTGGGTTTGCAGAAGCAGTTTGA 1545 41.81 MIIQLSKMGTLCKSSLILLFIWYFLAPTAYSGPNDGLVRVGLKKRKINQLNQIGHIGSNEGNAGRNYGFRGSFRDSGGDVIALNNFMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTKCYFSAACFLHSKYKSSQSSSYKKNGKSAAIQYGTGSISGFFSQDLITLGDLVVKEQDFIEATKEPGVTFVAAKFDGILGLGFQEISVGDAVPVWYNMLKQSLVQKPVFSFWLNRKSDEDEGGELVFGGVDHNHFKGKHTFVPVTQKGYWQFDMGDVLIGDNTTGFCATGCAAIADSGTSLVAGPTGVITQINQAIGAAGVVNQQCKTFVNQYGKTILEMLLYETQPKRICSEMKLCSFDSSHDTSMIIESVVDKNDGKSSGVHNEMCTLCEMAVVWMETKIQRNESEDEIINHVDQLCERLPNPLGESGVDCNSLSSMPTIAFTIGGKTFDLSPEEYIIKVGEGVAAQCISGFTALDVAPPRGPLWILGDIFMGKYHTVFDYGKLRVGFAEAV 514
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli1g00175 514 Pfam Saposin-like type B, region 2 324 357 IPR008138 -
Fli1g00175 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 293 304 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Fli1g00175 514 ProSiteProfiles Saposin B type domain profile. 384 425 IPR008139 -
Fli1g00175 514 SMART sapb-4 386 470 IPR008139 -
Fli1g00175 514 SMART sapb-4 285 357 IPR008139 -
Fli1g00175 514 ProSiteProfiles Peptidase family A1 domain profile. 91 511 IPR033121 -
Fli1g00175 514 FunFam Lysosomal aspartic protease 369 513 - -
Fli1g00175 514 Gene3D Acid Proteases 250 513 IPR021109 -
Fli1g00175 514 FunFam Lysosomal aspartic protease 77 319 - -
Fli1g00175 514 Pfam Saposin-like type B, region 1 387 423 IPR007856 GO:0006629(InterPro)
Fli1g00175 514 Pfam Eukaryotic aspartyl protease 90 513 IPR033121 -
Fli1g00175 514 CDD phytepsin 81 512 IPR033869 GO:0004190(InterPro)
Fli1g00175 514 SUPERFAMILY Saposin 322 423 IPR011001 -
Fli1g00175 514 ProSiteProfiles Saposin B type domain profile. 321 361 IPR008139 -
Fli1g00175 514 Gene3D Acid Proteases 38 249 IPR021109 -
Fli1g00175 514 Gene3D - 321 423 - -
Fli1g00175 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 106 117 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Fli1g00175 514 PRINTS Pepsin (A1) aspartic protease family signature 243 256 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Fli1g00175 514 PRINTS Pepsin (A1) aspartic protease family signature 293 304 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Fli1g00175 514 PRINTS Pepsin (A1) aspartic protease family signature 97 117 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Fli1g00175 514 PRINTS Pepsin (A1) aspartic protease family signature 487 502 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Fli1g00175 514 SUPERFAMILY Acid proteases 17 513 IPR021109 -
Fli1g00175 514 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 34 513 IPR001461 GO:0004190(InterPro)|GO:0004190(PANTHER)|GO:0006508(PANTHER)|GO:0006508(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli1g00175 K08245 phytepsin [EC:3.4.23.40]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr1:3505453 Fli8g01081 Fli-Chr8:30410332 dispersed