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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli1g00202 ATGTCGTTGGCAGTTGAATCGGTTACTAGCGAAGAAAAGACAAATGGGTTTGAAGAAATTGTGGAGGAAAAACAGAGCATGAAGAGAACAGAGAGTGAATCCCCTGTTTATGAGAGTGAAGATGAAGGTGAAGATGATGCAGAGGATAATCGAATCGAATTGGGTCCTCAGTATTCCCTCAAAGAACAAATTGAGAAAGATAAGGATGATGAGAGCCTCAGAAAGTGGAAAGAACAGCTACTTGGAAATGTTGATATTAATGATGTTGGAGAATCACTCGAAGCGGAAGTGAAAATCATCAGCCTTTCGATCGCGTCTCCTGGGAGATCCGACATTGTTCTTGCAGTACCCGAAGATGGGAAACCGAAAGGCTTATGGTTTACGCTAAAAGAAGGTTGTCGTTATAGTTTGAGGTTCAAGTTTCATGTCAGCCATAACATTGTTTCAGGTTTAAAGTACACCAACAATGTATGGAGAACTGGTGTCAAAGTGGATAGAGTGAAACATATGCTTGGAACATTTGGCCCTCAACAAGAAGCATATACTTATGAGATGCCTGAGGAGACAACCCCATCTGGTTACTTTGCAAGAGGAACGTACTCTGCTAAAACAAAGTTTGTTGATGATGACAACAAGTGCTACTTGGAGATCAACTATACGTTCGATATACGGAAAGATTGGGCGAAAGTTGAATGA 696 41.09 MSLAVESVTSEEKTNGFEEIVEEKQSMKRTESESPVYESEDEGEDDAEDNRIELGPQYSLKEQIEKDKDDESLRKWKEQLLGNVDINDVGESLEAEVKIISLSIASPGRSDIVLAVPEDGKPKGLWFTLKEGCRYSLRFKFHVSHNIVSGLKYTNNVWRTGVKVDRVKHMLGTFGPQQEAYTYEMPEETTPSGYFARGTYSAKTKFVDDDNKCYLEINYTFDIRKDWAKVE 231
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli1g00202 231 PANTHER RHO GDP-DISSOCIATION INHIBITOR 32 227 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
Fli1g00202 231 MobiDBLite consensus disorder prediction 1 58 - -
Fli1g00202 231 MobiDBLite consensus disorder prediction 12 36 - -
Fli1g00202 231 Pfam RHO protein GDP dissociation inhibitor 39 226 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Fli1g00202 231 FunFam Rho GDP-dissociation inhibitor 1 50 229 - -
Fli1g00202 231 SUPERFAMILY E set domains 37 227 IPR014756 -
Fli1g00202 231 PRINTS RHO protein GDP dissociation inhibitor signature 206 223 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Fli1g00202 231 PRINTS RHO protein GDP dissociation inhibitor signature 164 179 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Fli1g00202 231 PRINTS RHO protein GDP dissociation inhibitor signature 180 192 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Fli1g00202 231 PRINTS RHO protein GDP dissociation inhibitor signature 147 163 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Fli1g00202 231 Gene3D Coagulation Factor XIII, subunit A, domain 1 50 229 IPR024792 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli1g00202 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
88335 Fli1g00202 Fli4g01304
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr1:4176371 Fli4g01559 Fli-Chr4:86613829 dispersed
Fli Fli-Chr1:4176371 Fli4g01304 Fli-Chr4:80652996 wgd