AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli1g00276 ATGAGAGTGCATGTAGATTGCCCTGGATGCGAGAACAAGATCCGAAAAGCTCTTCAAAGACTCAAAGGAGTGGAGAACGTAGACATAGACATGGGGTTACAAAAGGTGACAGTCACTGGAATCGCCGACGAGAAAAAGGTGCTGAAGACGGTGAGAAAAACCGGTCGACGAGCCGAGATATGGAAGATACCCTACAACCCCGATATTCGTACCCATAACTACAATGTTAATCAATATGCTCAACAACAGCAACTACAGCAACAACAAAATAATGGTTCGGGCCCAGGCCCCACTGCGACATTCTACACTCGACAGCCGTCTTCTGCATCATCGTATAACTACTACAAACACGGTTATGATGACCAGTATGTTTATAACCCGGTCCAGTCCTCAGGCTTGATCGGGCACCAGACGGGTGCTGCCTTTAGCGATGAGAACACTCATGCTGCCTGTAATATTATGTAG 465 47.1 MRVHVDCPGCENKIRKALQRLKGVENVDIDMGLQKVTVTGIADEKKVLKTVRKTGRRAEIWKIPYNPDIRTHNYNVNQYAQQQQLQQQQNNGSGPGPTATFYTRQPSSASSYNYYKHGYDDQYVYNPVQSSGLIGHQTGAAFSDENTHAACNIM 154
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli1g00276 154 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 1 154 IPR045181 GO:0046872(InterPro)
Fli1g00276 154 CDD HMA 6 59 IPR006121 GO:0046872(InterPro)
Fli1g00276 154 Gene3D - 1 60 - -
Fli1g00276 154 Pfam Heavy-metal-associated domain 3 56 IPR006121 GO:0046872(InterPro)
Fli1g00276 154 SUPERFAMILY HMA, heavy metal-associated domain 3 61 IPR036163 GO:0046872(InterPro)
Fli1g00276 154 ProSiteProfiles Heavy-metal-associated domain profile. 1 59 IPR006121 GO:0046872(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli1g00276 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr14:38650597 Fli1g00276 Fli-Chr1:5532327 dispersed
Fli Fli-Chr1:5532327 Fli8g00841 Fli-Chr8:20470683 dispersed
Fli Fli-Chr1:5532327 Fli5g00428 Fli-Chr5:6920756 transposed