AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli1g00333 ATGGCTACCAATTCAGTTGAGGTTGATAATGGTGAAGAATCAAAAGTTCATGTCTTCTCATCGTCCACAGAGTTGCTTGAGAAGTTGCATCAGAAGTGGAAATCAGTCGAGAAACTGCCATATCCTGCAATGTATTCTAGTGTTTATGGTGGGATTATTCTTGATCCTGCTATGATGGTCATCCCGATCGATGATCATATGGCACATCGAGGCCACGGTGTGTTCGATACTGCCATCATCTTTGATGGATACCTGTATGAACTTGATGGTCATCTTGATCGAATCCTCATATCAGCATCGAAAGCCAAGCTCTCGCCTCCATTCACAAGATCAACTCTTCGATCGATCCTTATCCAGCTGGCAGCCGTATCAAAATGCAAGAAAGGAACTTTAAGATATTGGATAAGTGCAGGACCTGGGGATTTCTTGCTTACTCCTTCAGAGTCCACAACATCTGCGTTCTACGCAATCGTTATTGATGAAGAATTCTTGCAGTGTAAAGAAGGAGTAAAGGTGATAACTTCAACAATCCCCATGAAATTACCTATGTTTGCTACAAGCAAGAATGTGAATTACCTCCCAAATGTACTGTCAAAGCTTGAAGCAGAAGAGAAAGGTGCTTTTGCATCAATTTGGGTGGATGATGAAGGGTATGTCGCTGAGGGTCCGAATGTGAATGTTGGTTTTGTGACTCGCGAAAAAGAGCTTATTTTGCCATATTTTGACAAGATTTTAAGCGGGTGTACCGCGAAACGGCTTCTTGAATTGGCTCCAGAGCTGGTTGAAAATGGGAGTTTGAAGGGTGTGAAAATTGGGAATATAACAGTTGAGGAAGCCAAACAAGCTGCAGAAATGATGTACATTGGAAGCACACTGCCTTTACTGCCAATTATCGAGTGGGATGAGAAGCCGATTGGTGATGGGAAAGTTGGGGAGTTGACAATGGCGCTATCGGATCTGATTTGGGAGGATATGGTGGCTGGTCCGGAGACACACAGGATAAAGGTTCCTTATGCGTGA 1020 43.53 MATNSVEVDNGEESKVHVFSSSTELLEKLHQKWKSVEKLPYPAMYSSVYGGIILDPAMMVIPIDDHMAHRGHGVFDTAIIFDGYLYELDGHLDRILISASKAKLSPPFTRSTLRSILIQLAAVSKCKKGTLRYWISAGPGDFLLTPSESTTSAFYAIVIDEEFLQCKEGVKVITSTIPMKLPMFATSKNVNYLPNVLSKLEAEEKGAFASIWVDDEGYVAEGPNVNVGFVTREKELILPYFDKILSGCTAKRLLELAPELVENGSLKGVKIGNITVEEAKQAAEMMYIGSTLPLLPIIEWDEKPIGDGKVGELTMALSDLIWEDMVAGPETHRIKVPYA 339
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli1g00333 339 Gene3D - 161 330 IPR043132 -
Fli1g00333 339 Gene3D - 13 159 IPR043131 -
Fli1g00333 339 Pfam Amino-transferase class IV 73 300 IPR001544 GO:0003824(InterPro)
Fli1g00333 339 PANTHER AMINO-ACID AMINOTRANSFERASE 33 330 IPR050571 GO:0019752(PANTHER)
Fli1g00333 339 FunFam D-alanine aminotransferase 161 328 - -
Fli1g00333 339 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 49 326 IPR036038 GO:0003824(InterPro)
Fli1g00333 339 FunFam D-amino-acid transaminase, chloroplastic 21 159 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli1g00333 K18482 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr11:38293278 Fli1g00333 Fli-Chr1:6722401 dispersed