AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli1g00371 ATGGAGTGCATCAGGAACACTCTCGATAGACGCATCCAGTTCTACGAGGATGAGATTCGTACGCTCAATGAACAACGTTTGATGCCTACATGGAGCTTTTGTACCTTTTTCATCCTCAAAGAAAGCTTGGCATTCATGTTAGAGATGGCTAATCTTCACGAGGATTCACTGCGCGAATACGATGAACTAAAGCTATGTTACTTGGAAACAGTTAAAAGTGCAGACACACAAAGGGAATTTGGAGGCAAGGAGCAGGGAGATGATCAATCTGCGATACTAAACCGTAACAACAAACAACTGACACAGATTGTTCTAGAAACTTCCTTTCGAGAGTTCGAGTTTCAGCAATACCTATTTGCCTGTCAAGCTAAGCTGTTGTTTAGTCTAAACCGTCCATATGACGTTGTGTCAAGAGGGTTCTCGTTTATAATTAGTTTCTCAGAAGCATTGGCCCTGCATGAGAGTAATTTGCCCTTTTGTATGAGGGAACTTTGGATCCTAACCTCATGTTTGAGCCTGCTCAATGCAACTGCTGACCATTATAGAGACGGACAAGTGGGACCGGATGTAGAAAGAGATTATTATCGTCTACGGGGTGAATTATATTCTCTATCTCGAGTTAAGTTCATGAGGCTTGCATATTTAATTGGATATGGATCTAATATAGAAAGAAGTCCACTCAACAGTGCTTCACTTAGCATGTTACCTTGTCCTAAGCCAGCAGTTAGGCCTTCAGTTCCCTCTGATGCCTCATCTGAGGGTCTTGTCAAAGAAAAGATAATTCTTCAAGTTACTCCAAGAATCAAGCACTTTGGTATTCAGAGGAAACCGCTGCCTCTTGAACCTCCTCCTGTTCAGTTTGACTCTTATCATCTAAGCCCGTTTCAAGGGTCTGATGGTTCAGATGCAGAACCGCAAACATCAGTTTCAAGGACAGATTCTACAGCAGCAAGCACTGAGAGCTCAGTTGATACCACGAGACTAGCAGAAGTTTTTGTGGCTGCTGAACATGCCCTTCGTGCAACTATTTCTGATCCAGATTTATGGAAATCTTTATCATCTTTAGATGAATTCGAGAAAAAGAATCTTGAGCTATCAAAGGGTGCTGCTGATAGTTATTATCATGCATGGTGGAAGAGGCATGGAGTTGTTTTTGATGGTGAAATTGCATCTGTTTATTTCAAACACAAGAATTATGATCAAGCTGCAAATTCGTACGAAAAAGTTTGCGCGCTTTATTCTAGTGAAGGATGGCAAGATTTGTTAGCAGATGTGCTTCCTAACTTAGCCGAATGCCAGAAAATACTTAATGATAAGCCTGGTTACTTAACATCATGTGTTAGATTACTTTCTTTGGATAAAAACTTGTTCTTGAACAAAGAACGGCAGGCGTTTCAGTCAGAACTAGTTCGTCTTGCACACAGTGAAATGGCTGACCCGGTCCCTTTAGATGTGTCAACACTGATAACCTATTCGGGTCATTCAGGCCCACCTATGGAGCTTTGTGACGGTGACTCAGGCACTTTGTCTATAACTTTGTGGAGTGAGTTTCCTGATGATATCACTCTTGAATCACTTAGTCTCACCTTGACAGCTACACACAATGCTGATGAACGCGTTAAGGCAATCAGGAGCAGTGGTGTTAATATATTGAACGCGGGTCAAAATACGATTGCTCTTTCATTGCCCCCACAAAAACCGGGCTCCTATGTGTTGGGTGTTCTTACAGGGCAGATTGGTCATTTAAGATTCAGATCTCATGGATTCTCCAGAGGTAGGCCAGGAGACAGTGATGATATGAGCTTTGATAAGCCAACTAAGCCTATTTTGAAGGTATTCAAACCAAGGTCCCTTGTGGATCTATCTGCAGCAGTTTCATCTGCATTACTAATGAACAAGCCTCAGTGGGTCGGGATAGTTATAAAGCCATTAGAATACTCCCTCAAGGGTGCTCGTTTACACATTGACGCTGGGCCTGGACTAAAGATCGAGGAGTCACGCGCCATTGAAATTGAGAAACACGTCGATAAAGATAATAATAGTTCTAATGCTTCTGATATTCCTACAAAATCTTCTCAAATGAATCTTACAAATGGTAGTATAGAGTTACCAGATTGGGCCAGCAATATAACTAGCATTTTATGGGTTCCAGTGTGTGCCATTAGTGATGGGCTACCAAGAGGAACATCTGCAGGAGTATTATCGACCCCGAGACCAAGCATTGCTAACGGGCTGAGGACTTTAGCCCTCAAACTCGAATTTGGGGCGTCACATAATCAGATACTGAAAAGGACTGTGCCGGTTCATTTCACTGACCCGTTCCACATCAGCACGCGGGTCACAGACCAGGGGAGTGATGGTTCATTGTTTTTGCAGGTGATATTGCAGTCACAGGTGAAGGCCTCATTAACTATACATGATGTTTGGTTAGATCTGCAGGATGGGTTTTCTCATGCTGGACGAGGTGACGGGAGACCGACATCTGGCATGTTCCCATTGGTTGTTCCCCCAACATCTAAATCTGGAATTTTGTTTGGTATTTCACTTGGAAATACCACTGAAGATGAAGGGAAAGCGGATCATTGCGATACAATAATAAATATAAAATACGAAATTTGCGGGGATAGAAATGTTGGATCCCATACCCCTCTCTCTCTCAAAACCGAAGGACCCGAACATGATGACGACACATCGTTTTTAACGTTCAAGGCCGGTCTTGTCTTACAACGGCCAGTACAGGAACCGTCATTGGCGGTTGCTTTTCTTCCTCTACCTTCAAACGGTCTTACAGTTGGTCAACTAGTCACATTCAAGTGGAGACTCGAAAGGTTGACCAACTTTGACTCCAAAGACGAATTATTATACGAAGTCAACGCCAATTCTAGGAACTGGATGATTGCTGGAAGAAAAAGAGGCCATGCCCCTCTCTCCTCCAAACAAGGAGCAAGAATTGAGATATCAATAATGTGTGTGCCACTAGCAGCAGGACATGTACGACCTCCACAACTCAACTTGCCCGATGTCAATCGAGCCAATATATGTTGTAATCCTGCGGGGCCGCATTTAGTGTGCGTGCTACCTCCACCTTTGAGCTCGTCATTTTGCATTCCCGCGTGA 3117 43.31 MECIRNTLDRRIQFYEDEIRTLNEQRLMPTWSFCTFFILKESLAFMLEMANLHEDSLREYDELKLCYLETVKSADTQREFGGKEQGDDQSAILNRNNKQLTQIVLETSFREFEFQQYLFACQAKLLFSLNRPYDVVSRGFSFIISFSEALALHESNLPFCMRELWILTSCLSLLNATADHYRDGQVGPDVERDYYRLRGELYSLSRVKFMRLAYLIGYGSNIERSPLNSASLSMLPCPKPAVRPSVPSDASSEGLVKEKIILQVTPRIKHFGIQRKPLPLEPPPVQFDSYHLSPFQGSDGSDAEPQTSVSRTDSTAASTESSVDTTRLAEVFVAAEHALRATISDPDLWKSLSSLDEFEKKNLELSKGAADSYYHAWWKRHGVVFDGEIASVYFKHKNYDQAANSYEKVCALYSSEGWQDLLADVLPNLAECQKILNDKPGYLTSCVRLLSLDKNLFLNKERQAFQSELVRLAHSEMADPVPLDVSTLITYSGHSGPPMELCDGDSGTLSITLWSEFPDDITLESLSLTLTATHNADERVKAIRSSGVNILNAGQNTIALSLPPQKPGSYVLGVLTGQIGHLRFRSHGFSRGRPGDSDDMSFDKPTKPILKVFKPRSLVDLSAAVSSALLMNKPQWVGIVIKPLEYSLKGARLHIDAGPGLKIEESRAIEIEKHVDKDNNSSNASDIPTKSSQMNLTNGSIELPDWASNITSILWVPVCAISDGLPRGTSAGVLSTPRPSIANGLRTLALKLEFGASHNQILKRTVPVHFTDPFHISTRVTDQGSDGSLFLQVILQSQVKASLTIHDVWLDLQDGFSHAGRGDGRPTSGMFPLVVPPTSKSGILFGISLGNTTEDEGKADHCDTIINIKYEICGDRNVGSHTPLSLKTEGPEHDDDTSFLTFKAGLVLQRPVQEPSLAVAFLPLPSNGLTVGQLVTFKWRLERLTNFDSKDELLYEVNANSRNWMIAGRKRGHAPLSSKQGARIEISIMCVPLAAGHVRPPQLNLPDVNRANICCNPAGPHLVCVLPPPLSSSFCIPA 1038
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli1g00371 1038 Pfam Trafficking protein particle complex subunit 10, TRAPPC10 936 1005 IPR022233 -
Fli1g00371 1038 MobiDBLite consensus disorder prediction 673 693 - -
Fli1g00371 1038 SUPERFAMILY TPR-like 388 439 IPR011990 GO:0005515(InterPro)
Fli1g00371 1038 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1-TMEM1 1 1037 IPR045126 GO:0006891(PANTHER)|GO:0034498(PANTHER)|GO:0048193(InterPro)|GO:1990071(PANTHER)|GO:1990071(InterPro)
Fli1g00371 1038 Pfam Foie gras liver health family 1 386 451 IPR021773 -
Fli1g00371 1038 Coils Coil 5 25 - -
Fli1g00371 1038 MobiDBLite consensus disorder prediction 296 322 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli1g00371 K20307 trafficking protein particle complex subunit 10