AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli1g00505 ATGAACATTGAAATCTACGGTAGGCATGCTCTTCTCTTCGATGATGATGCATCTGCAGCCTTCGTAAACTCCGACGACGCACTTGTTGAATGGAATTCGCTGTTAATCGATCGTTACGACGTCCGGCATCTCCTCTCCAGCCCTCCGCCGTCTCGGCGGCGGCGGAATCAACAAACGTCGCACTCGTCCTCCGCCGATGCGGACCTCGATTATGAACGGTATCTGGATCTCCCCCCACCGTCGGAGGAAGAAGAAGAAGATGCAAAACCAGATGCCGTAGGTGGATTTAATGCTGTTCCTTTTTCTTATGGAAATGATGAGGATGCTAATGATCAAAAGACTGCCGAGACTGAACAAGAAGTCCCTAAATTTCATCCCCCCTTCCCTGTACCTGACAGCCTTGTTCAAAACTTGCCTCCTACGGAGAAAGTACATCAGATTATTGCAAGGACTGCTCTTTTTGTCAGTAAAAATGGTGGTCAATCAGAGATTATTTTGAGGGTGAAGCAAGGAGACAACCCAACATTTGGATTCTTAATGCCAGATCATCATCTCCATCCGTACTTCAGGTTTCTGGTTGACAACCAGGATCTCTTACAATCAAAAGACAACGAGCAGCCTGAAAATGATGAGAAAATATCAAATGCTGGAGCATTGTCTTTACTTGGTTCTGTATATGGTACCGGTGAGGATGATGATGGTGGAACTGAGGATCCATCATCATCTATAGAATGTGTATCTGTGAATAATGTTAGTGTAGAAGCTACTGCTCCTCTTGTAGAAGGGAAAACCATTTTGCCATCTCGCAAAGACGAGCCTATTCTAAAAAGAAATTCTCTGTCAAATGCATTGAAAACTGGAAGAACTAGTAGTCTAAAGAAAGGCGAGGTTTCAGCTTCACTAGCGTCTGTTCCAGATAAGTCGCGAGCTTCCTCTCTACCTCCAATTCCCAAAACTGAGCTCATGCTTGTGGACCCACCATCTGACATGAAACGGTTGGTTGAAAAGATAGTGGAATTTATCCTCAAGAATGGGAGGCAGTTTGAGGCTGTACTTATGGAACAAGATCGTGGTCATGGAAGGTTCCCGTTTTTAATCCCATCTAATATATTCCATCCATACTATCTGAAAGTTCTCCAGAAAGCCCAAGAGTCGAAATTAACTGTCAAAAGTCTTTATGACGAGAAAGAAGATATCCGAGGACATATCTCAAACAAGAAAAAGTCTACCTTGAGGGAGAACGAGAATAATATGATGGAATCTGATGATATACCACTTGATTCTGAAAGAAAAGAGAAGTTTAAGATGGTTATTAACAAGTCTAAAAAAGAAGGATCAGATTTGCCAGCTAAATCCACACAATCACCACCTAGAGTCCAGGTGGATGCTGATCAAGCAGCAGCCATTCTTCAAGCTGCTACTAGAGGCATTAAACCTTCAAATTTGGGGCTTTTGTATGGACAACCATCTAATGAAGCTGGTTTGTCTGAATCACACTTGACACACGAGCAGAAATTAAAAGCTGAGAGGCTGAAACGGGCCAAGATGTTTGTGGCTCAGTTGAAAAGCGGGGCAGTTCCATCCAAAGCTGAGCCCTCACGTTGCTCATCAGCTGAGCCACAAGCTGACAGCCGCCCTGCAGCCAAAGAAACCGAGAAGAGCACATCTCCTTCAGATTTTGATACTTCAGATAAAAAACTAAAACCAGAAAAAGAACATTTGAATGAGGAGAAACGAGCAATGAGAAATTACCGTGCTCGTTCTGTTGGAGAAAAAAAAGATGATGATGAAAATGATGATGACAACGACGATGATGATGAGAGAGAAAGAAAAAGGTCACATAGACACCATAAGAAGAAATATCGATCTCATAATCATTTAGTTGAAGATGAGACAGAAGAAAAATACGCAGATGAGAGAGATCATAAACATGCAAAAAGAAGACACCGATCTCATCGTTCTTCCCATAAACATGATGACATGGACAAAACCATAGAAGAAAAGGATCAAAAGTATTCAAAGAAGAAGAAACATAGATCTTCTAGTTCTTATGAAGATGATGAACAAGACAGTGAACATGAATATTCTAGAAAGAAACATCAATCTCATCATTCTTCACACGATGAAGCTGACAGTGATGATAATTATTTTAGGAAAAAACGAAAACATAGATCTCACAAATCTTCTCATAGGCACAAGCATAGGAAAAGTCACTCTTCTAGACATAAACGGAAGGTTGACGTGTCTTCAGAAGAGGAGTGTATGGACCAAAATAAGGCTGATAAGAATGTCAAGGGACCAAACTCGGAAAGAGAACTTGAAGACGGGGAGATATCGGGTCCAACAAAAGGGGGAGCATTGACTGATGGTGGGGCTAGTAGAGAACCTTCGGTTGATGTATCAAGTTCGGTTCAAGATCCGAGGTCACTGACTCAGCCATCCGGAGCAACTGAGGTTTCTGATGATCTTCGGGCCAAAATCAGAGCTATGTTGATGTCAACATTGTAA 2508 42.15 MNIEIYGRHALLFDDDASAAFVNSDDALVEWNSLLIDRYDVRHLLSSPPPSRRRRNQQTSHSSSADADLDYERYLDLPPPSEEEEEDAKPDAVGGFNAVPFSYGNDEDANDQKTAETEQEVPKFHPPFPVPDSLVQNLPPTEKVHQIIARTALFVSKNGGQSEIILRVKQGDNPTFGFLMPDHHLHPYFRFLVDNQDLLQSKDNEQPENDEKISNAGALSLLGSVYGTGEDDDGGTEDPSSSIECVSVNNVSVEATAPLVEGKTILPSRKDEPILKRNSLSNALKTGRTSSLKKGEVSASLASVPDKSRASSLPPIPKTELMLVDPPSDMKRLVEKIVEFILKNGRQFEAVLMEQDRGHGRFPFLIPSNIFHPYYLKVLQKAQESKLTVKSLYDEKEDIRGHISNKKKSTLRENENNMMESDDIPLDSERKEKFKMVINKSKKEGSDLPAKSTQSPPRVQVDADQAAAILQAATRGIKPSNLGLLYGQPSNEAGLSESHLTHEQKLKAERLKRAKMFVAQLKSGAVPSKAEPSRCSSAEPQADSRPAAKETEKSTSPSDFDTSDKKLKPEKEHLNEEKRAMRNYRARSVGEKKDDDENDDDNDDDDERERKRSHRHHKKKYRSHNHLVEDETEEKYADERDHKHAKRRHRSHRSSHKHDDMDKTIEEKDQKYSKKKKHRSSSSYEDDEQDSEHEYSRKKHQSHHSSHDEADSDDNYFRKKRKHRSHKSSHRHKHRKSHSSRHKRKVDVSSEEECMDQNKADKNVKGPNSERELEDGEISGPTKGGALTDGGASREPSVDVSSSVQDPRSLTQPSGATEVSDDLRAKIRAMLMSTL 835
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli1g00505 835 Gene3D Surp module 319 388 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Fli1g00505 835 SMART surpneu2 331 384 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Fli1g00505 835 SMART surpneu2 145 198 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Fli1g00505 835 MobiDBLite consensus disorder prediction 286 313 - -
Fli1g00505 835 MobiDBLite consensus disorder prediction 744 778 - -
Fli1g00505 835 MobiDBLite consensus disorder prediction 45 124 - -
Fli1g00505 835 MobiDBLite consensus disorder prediction 655 718 - -
Fli1g00505 835 MobiDBLite consensus disorder prediction 224 243 - -
Fli1g00505 835 SMART DRY-EERY-2 1 107 IPR019147 -
Fli1g00505 835 Pfam Surp module 331 380 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Fli1g00505 835 Pfam Surp module 146 194 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Fli1g00505 835 MobiDBLite consensus disorder prediction 624 641 - -
Fli1g00505 835 MobiDBLite consensus disorder prediction 719 743 - -
Fli1g00505 835 Pfam Alternative splicing regulator 3 87 IPR019147 -
Fli1g00505 835 SUPERFAMILY Surp module (SWAP domain) 122 194 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Fli1g00505 835 Gene3D Surp module 140 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Fli1g00505 835 MobiDBLite consensus disorder prediction 545 594 - -
Fli1g00505 835 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 820 IPR040397 GO:0000395(PANTHER)
Fli1g00505 835 MobiDBLite consensus disorder prediction 50 65 - -
Fli1g00505 835 MobiDBLite consensus disorder prediction 522 822 - -
Fli1g00505 835 MobiDBLite consensus disorder prediction 795 818 - -
Fli1g00505 835 ProSiteProfiles SURP motif repeat profile. 147 189 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Fli1g00505 835 SUPERFAMILY Surp module (SWAP domain) 307 380 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Fli1g00505 835 ProSiteProfiles SURP motif repeat profile. 333 375 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli1g00505 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr1:10308331 Fli2g02612 Fli-Chr2:51029037 dispersed