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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli1g00529 ATGGGTGACAGTCAGTACTCGTTCTCTCTTACTACTTTCAGTCCTTCGGGAAAGCTTGTTCAGATTGAACATGCCCTCACAGCTGTTGGCTCTGGTCAAACTTCATTGGGGATAAAAGCTTCTAATGGGGTCGTAATTGCAACCGAAAAGAAGCTTCCATCCATTTTGGTTGATGAGACATCGGTGCAAAAGATTCAGATTCTAACACCTAATATTGGAGTTGTTTATAGTGGGATGGGACCTGATTCTAGAGTTCTGGTCAGAAAGAGTAGAAAGCAGGCAGAGCAGTACCAGCTACTGTACAAAGAACCAATCCCTGTTACACAACTTGTAAGGGAAACTGCTGCTGTTATGCAAGAATTTACTCAATCAGGTGGTGTAAGACCTTTTGGTGTTTCACTTCTTGTTGCTGGTTATGATGACAAAGGTCCCCAACTGTATCAGGTGGATCCCTCAGGTTCTTATTTCTCCTGGAAAGCTTCGGCCATGGGAAAGAATGTATCTAATGCAAAGACATTTCTTGAAAAGAGGTACACTGATGATATGGAGCTTGAGGATGCGATACACACAGCTATTTTAACATTGAAGGAGGGATTTGAAGGACAAATATCTGGCAAAAACATTGAGATTGGTGTCATTGAGGCTGACAGAACATTCAGAGTCCTCACTGCAGCCCAAATTGAAGACTATCTTCAAGAGGTGGAGTAA 708 42.51 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDETSVQKIQILTPNIGVVYSGMGPDSRVLVRKSRKQAEQYQLLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELEDAIHTAILTLKEGFEGQISGKNIEIGVIEADRTFRVLTAAQIEDYLQEVE 235
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli1g00529 235 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Fli1g00529 235 Pfam Proteasome subunit 31 213 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Fli1g00529 235 PANTHER PROTEASOME SUBUNIT ALPHA-BETA 4 232 IPR050115 GO:0010498(PANTHER)|GO:0019773(PANTHER)
Fli1g00529 235 CDD proteasome-alpha-type-2 6 231 - -
Fli1g00529 235 SMART Proteasome-A-N-2 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Fli1g00529 235 FunFam Proteasome subunit alpha type 3 235 - -
Fli1g00529 235 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 5 234 IPR029055 -
Fli1g00529 235 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 3 235 IPR029055 -
Fli1g00529 235 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Fli1g00529 235 ProSiteProfiles Proteasome alpha-type subunit profile. 21 231 IPR023332 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli1g00529 K02726 20S proteasome subunit alpha 2 [EC:3.4.25.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr1:10760781 Fli1g01333 Fli-Chr1:59462653 dispersed
Fli Fli-Chr1:10760781 Fli2g01503 Fli-Chr2:27064809 transposed
Fli Fli-Chr1:10760781 Fli16g00621 Fli-Chr16:33925108 transposed