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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli2g01929 ATGTCATCTCTCTGTGATTTCTGCAACCAGAGATCCGCAGTGCTGTACTGTAAAGCCGATTCAGCTAAGCTCTGTTTGCTCTGCGACAACGCCGTACACTCCGCTAACGCTCTCTCTCTCAAGCATCTCCGGTCTCAGATCTGCGACAACTGCGGTTCCGATGGCGTCTCCGTCGTCTGTTCCACCGAGAACCTCCTCCTCTGCACCGCTTGCGACCACGATTTCCACGGTGACTCTTCGGTTTCCTCCTTCCACAATCGTTTTCCCGTCGATGAGATCACCGGTTGCCCTTCTGTTTATGAACTCGCTTCCGTTTGGGGGTTTAGTCTGACGCCTTCGGTTTCCGACGGTAATTTGTGTGAGAATAAGCTTTCTGCTACGGATTTTCGGGGTTTGACGACGAGACGTGATGAAACTAGTTGTTATGATGAGGTGCCTAGTGTTGAGTGGAAATCGAGAGGTTTGGGGTGTGGAGTGCGTGCGAAGGTTATGTATAAGCAGTTGTTGGAGCTTGCGAAGGAACGATTTGATGGAGATGGAGGTGAATTGGGGCCTCGAACTCCGAGTGGATGTGGTCAGAAGGAGATATCAGAAGGTTTTGAGTTTGAGGAACAAGAGGAGCAGGAATTGTTGAATCAGCAAACTCCTTTGACGTATTTGCTCATGCCGCCCCAGAATTCGTCGAATTCTAAAGCGAATAATATCACCGAATTTAGTAACATGTGGAACTATAGCCCTAAACGCCAAACAAGTCAGATATGGGATTTCAGTCTAGGAAGATCAAGGTCTTCCGAGGCAAGATGTGATAATCTTGGTTTTGCAATAAACAACTGTACTGACCTTGTTGAGGATGCTTCTTTCACAACAATGGAAGTATTAAAAGAAATGGATGCTATAAACATACCTATCGCCACCAATCCTTCACAAAATATATCTGGTTGCAGATCAACAATGGAGAGTGACAACAGACAAATTACTGGACCATCATCAGAAGCAAAAATGATGGAATTTAATGGATGTGATTCGATCATGGATGGTCAGATGATAGACGGGCTTTTATTGACTAGTCAAGGAATAGAATTACCAGCAACAACCAAAGTGGACGCTCAGCAGTTTGCACAGAACAGATGCAATGCAATGTTACGTTACAAGGAGAAGAAGAAAACACGAAGGTACGACAAGTGCATCCGCTACGAGTCACGAAAGGCTAGAGCTGATACCAGAAAACGAGTAAAGGGCCGGTTTGTGAAGACAATTCAATGA 1263 45.68 MSSLCDFCNQRSAVLYCKADSAKLCLLCDNAVHSANALSLKHLRSQICDNCGSDGVSVVCSTENLLLCTACDHDFHGDSSVSSFHNRFPVDEITGCPSVYELASVWGFSLTPSVSDGNLCENKLSATDFRGLTTRRDETSCYDEVPSVEWKSRGLGCGVRAKVMYKQLLELAKERFDGDGGELGPRTPSGCGQKEISEGFEFEEQEEQELLNQQTPLTYLLMPPQNSSNSKANNITEFSNMWNYSPKRQTSQIWDFSLGRSRSSEARCDNLGFAINNCTDLVEDASFTTMEVLKEMDAINIPIATNPSQNISGCRSTMESDNRQITGPSSEAKMMEFNGCDSIMDGQMIDGLLLTSQGIELPATTKVDAQQFAQNRCNAMLRYKEKKKTRRYDKCIRYESRKARADTRKRVKGRFVKTIQ 420
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli2g01929 420 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Fli2g01929 420 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 417 - -
Fli2g01929 420 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Fli2g01929 420 ProSiteProfiles CCT domain profile. 376 418 IPR010402 GO:0005515(InterPro)
Fli2g01929 420 CDD Bbox1-BBX-like 4 47 IPR049808 -
Fli2g01929 420 Pfam CCT motif 376 417 IPR010402 GO:0005515(InterPro)
Fli2g01929 420 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli2g01929 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr2:35290274 Fli7g01791 Fli-Chr7:84580754 dispersed
Fli Fli-Chr5:12422455 Fli2g01929 Fli-Chr2:35290274 dispersed
Fli Fli-Chr2:22100616 Fli2g01929 Fli-Chr2:35290274 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fli1g00246 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 51.991 4.80e-131 380.0
Fli1g00540 . 307 380 C2C2-CO-like Transcription Factor family AT5G24930 35.366 4.27e-09 54.3
Fli1g03137 . 1 99 C2C2-CO-like Transcription Factor family AT2G33500 63.107 1.51e-39 136.0
Fli2g01207 WGDA 9 347 C2C2-CO-like Transcription Factor family AT3G02380 46.114 8.33e-109 322.0
Fli2g01878 . 17 211 C2C2-CO-like Transcription Factor family AT1G75540 56.061 7.72e-64 199.0
Fli2g01929 . 12 398 C2C2-CO-like Transcription Factor family AT2G33500 39.007 1.54e-77 244.0
Fli2g02888 . 6 204 C2C2-CO-like Transcription Factor family AT5G54470 39.13 1.28e-31 113.0
Fli3g00491 . 1 122 C2C2-CO-like Transcription Factor family AT2G33500 57.143 6.19e-45 152.0
Fli3g01749 . 315 388 C2C2-CO-like Transcription Factor family AT5G24930 40.541 3.72e-11 62.4
Fli3g02093 . 1 153 C2C2-CO-like Transcription Factor family AT2G33500 47.093 3.86e-45 152.0
Fli4g01383 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 53.035 1.57e-97 287.0
Fli4g01494 . 3 165 C2C2-CO-like Transcription Factor family AT4G27310 38.953 7.58e-32 113.0
Fli4g01762 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 47.12 6.85e-92 280.0
Fli4g02052 ACH 225 276 C2C2-CO-like Transcription Factor family AT2G24790 55.769 2.81e-12 64.7
Fli5g00070 . 1 122 C2C2-CO-like Transcription Factor family AT2G33500 53.175 9.92e-40 139.0
Fli5g00401 . 10 273 C2C2-CO-like Transcription Factor family AT1G68190 38.87 4.95e-57 187.0
Fli5g00725 . 1 39 C2C2-CO-like Transcription Factor family AT2G33500 46.512 3.15e-07 47.4
Fli5g00964 . 105 211 C2C2-CO-like Transcription Factor family AT1G75540 41.818 6.80e-12 58.9
Fli5g01000 . 1 50 C2C2-CO-like Transcription Factor family AT1G75540 72.0 7.22e-23 85.9
Fli5g02190 . 1 76 C2C2-CO-like Transcription Factor family AT2G33500 58.75 6.91e-26 101.0
Fli5g02359 . 1 48 C2C2-CO-like Transcription Factor family AT1G75540 66.667 1.35e-19 78.6
Fli5g02385 WGDA 8 179 C2C2-CO-like Transcription Factor family AT2G47890 52.764 6.92e-67 207.0
Fli6g00686 . 184 386 C2C2-CO-like Transcription Factor family AT5G24930 29.717 3.95e-13 68.6
Fli6g01522 . 9 347 C2C2-CO-like Transcription Factor family AT3G02380 50.521 3.11e-120 350.0
Fli7g00413 . 167 211 C2C2-CO-like Transcription Factor family AT1G75540 51.111 4.35e-09 49.3
Fli7g01397 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 40.698 1.22e-11 61.6
Fli7g01791 WGDA 8 328 C2C2-CO-like Transcription Factor family AT2G47890 43.407 2.51e-91 275.0
Fli8g01354 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 57.143 1.83e-79 234.0
Fli10g00773 . 1 198 C2C2-CO-like Transcription Factor family AT1G75540 49.495 1.71e-56 181.0
Fli10g00863 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 53.125 4.22e-131 378.0
Fli11g00317 . 1 122 C2C2-CO-like Transcription Factor family AT2G33500 57.143 2.55e-45 153.0
Fli11g00849 ACH 176 270 C2C2-CO-like Transcription Factor family AT2G24790 40.0 8.80e-12 63.2
Fli11g01093 . 1 122 C2C2-CO-like Transcription Factor family AT2G33500 56.349 8.09e-45 152.0
Fli11g01553 . 1 48 C2C2-CO-like Transcription Factor family AT1G75540 72.917 9.37e-22 85.1
Fli11g01735 . 1 197 C2C2-CO-like Transcription Factor family AT1G75540 57.36 1.17e-72 221.0
Fli12g00371 . 1 153 C2C2-CO-like Transcription Factor family AT2G33500 46.512 6.92e-44 149.0
Fli12g00775 . 170 197 C2C2-CO-like Transcription Factor family AT1G75540 75.0 6.77e-09 48.5
Fli12g02170 . 3 401 C2C2-CO-like Transcription Factor family AT1G68520 42.138 2.01e-98 300.0
Fli13g00011 . 237 332 C2C2-CO-like Transcription Factor family AT5G15850 37.624 2.80e-10 58.5
Fli14g01813 . 1 118 C2C2-CO-like Transcription Factor family AT4G39070 68.0 2.79e-56 174.0
Fli15g00274 . 8 355 C2C2-CO-like Transcription Factor family AT5G57660 46.234 1.68e-97 293.0
Fli15g00283 . 1 48 C2C2-CO-like Transcription Factor family AT1G75540 68.75 2.53e-19 77.8
Fli15g00538 . 1 48 C2C2-CO-like Transcription Factor family AT1G75540 72.917 5.11e-22 85.5
Fli15g00640 . 1 373 C2C2-CO-like Transcription Factor family AT5G48250 56.579 1.59e-137 394.0
Fli15g00897 . 270 331 C2C2-CO-like Transcription Factor family AT5G57660 41.892 2.23e-10 57.4
Fli10001183.1g00003 . 17 211 C2C2-CO-like Transcription Factor family AT1G75540 52.525 7.78e-58 184.0
Fli10000975.1g00003 . 42 275 C2C2-CO-like Transcription Factor family AT2G24790 37.712 2.80e-30 111.0
Fli10000385.1g00005 . 170 211 C2C2-CO-like Transcription Factor family AT1G75540 64.286 3.14e-10 52.4
Fli10001286.1g00002 . 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.668 3.69e-140 402.0
Fli10001262.1g00002 . 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.668 3.69e-140 402.0
Fli10001084.1g00004 . 1 48 C2C2-CO-like Transcription Factor family AT1G75540 72.917 5.11e-22 85.5
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fli CCT 3.6e-15 CL0281 TF C2C2-CO-like