AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli2g01940 ATGGAGGATGAGTATGCAAAACTTATCAGGAGGATGAATCCACCCAGAGTTACAATCGACAACGATTCGTCCTCAGATGCAACAGTTATCCAGGTTGAAAGTGTTAATAAGCATGGTAGTCTGCTGGAAGTTGTGCAAGTTTTTGCGGATTTAGATCTTGTTATTAAAAAGGCTTATATTTCATCAGATGCTGGATGGTTCATGGATGTGTTCAATGTTATATGCAATGACGGAAGCAAAATTAGAGATGATGGGGTAGTCAGTTATATAAAACAGGTGCTTGAAAGTGATGCATTTTACGTACCATCACTGAATGGTTCAGTTGGATTGAAGCCATCGGATGATTACACCGTAATAGAACTAGTTGGAACAGACAGACCTGGATTATTATCTGAGGTGTCTGCAGTTCTAACAAACCTTGGTTGTAATGTGCTCAATGCTGAAATATGGACTCACAATGCCAGAGCTGCAGCTGTGGTACATGTCACAGATGATAAAACAAAGTGTGCAGTTGAAGACCCAAAGCGGCTCTTGACTATTAAGAAGCTTCTTTTTAACCTTCTCAAGGGAAACAATGATTTGAAGACTGCAAAAATGACACTTTCCACCCCTGGTTCCATGCACAGACAGAGAAGATTACATCAAATTATGTTTGCTGAGAGGGATTACGAGAAAGTTGAAGAAACAGAACCAGAAAAGGAAAATAAGTTGAGAACACAGGTTACGGTTTTAGATTGTGTTGAGAAGGATTACACAGTTGTTACTATGCATTGTAGGGATAGACCAAAGCTGTTGTTTGATATTATTTGCACTCTTACCGACATGGAATATGTAGTCTTTCATGGAGTAGTTCACACAGGGAAAACGGAGGCTTTTCAGGAATATTACATTCGGCATGTTGATGGGAGTCCAGTAAGCTCAGAAGCAGAACGAGAGCGTGTTATGCAATGTCTTGAAGCTGCAATTGAGAGGAGGACATCTGAGGCGTTAGAGCTAGAATTGTGCACAACAGATCGTGTTGGACTTCTTTCAGATATAACCAGAATCTTCAGAGAAAATAGTTTGTGTATAAAAAGAGCAGAGATTTCAACCGAAGGTGGAACAGCTAAAGACAAGTTTTATGTGACTGACATGACCGGTAACAACCCTGTTGACCCAAAAACCATAGATTCTATTCGAAGACAAATCGGTCAACAAGCAGCACTGCATGTTAGATGGAATCCTACTCAAGCATCAGACCCACAACCTGAAGAAACAACAATGGGCTTTCTCTTTGGAAGTCTGTTTAGAGGCCGAACGTTTCAGACTTTGAAGTTAGTCGGCTCCTATTCCTGA 1335 40.6 MEDEYAKLIRRMNPPRVTIDNDSSSDATVIQVESVNKHGSLLEVVQVFADLDLVIKKAYISSDAGWFMDVFNVICNDGSKIRDDGVVSYIKQVLESDAFYVPSLNGSVGLKPSDDYTVIELVGTDRPGLLSEVSAVLTNLGCNVLNAEIWTHNARAAAVVHVTDDKTKCAVEDPKRLLTIKKLLFNLLKGNNDLKTAKMTLSTPGSMHRQRRLHQIMFAERDYEKVEETEPEKENKLRTQVTVLDCVEKDYTVVTMHCRDRPKLLFDIICTLTDMEYVVFHGVVHTGKTEAFQEYYIRHVDGSPVSSEAERERVMQCLEAAIERRTSEALELELCTTDRVGLLSDITRIFRENSLCIKRAEISTEGGTAKDKFYVTDMTGNNPVDPKTIDSIRRQIGQQAALHVRWNPTQASDPQPEETTMGFLFGSLFRGRTFQTLKLVGSYS 444
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli2g01940 444 Gene3D - 114 182 - -
Fli2g01940 444 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 7 406 IPR040217 -
Fli2g01940 444 ProSiteProfiles ACT domain profile. 29 107 IPR002912 -
Fli2g01940 444 CDD ACT-ACR-3 251 325 - -
Fli2g01940 444 ProSiteProfiles ACT domain profile. 118 199 IPR002912 -
Fli2g01940 444 SUPERFAMILY ACT-like 113 173 IPR045865 -
Fli2g01940 444 ProSiteProfiles ACT domain profile. 331 407 IPR002912 -
Fli2g01940 444 Pfam ACT domain 117 166 IPR002912 -
Fli2g01940 444 SUPERFAMILY ACT-like 326 400 IPR045865 -
Fli2g01940 444 SUPERFAMILY ACT-like 24 93 IPR045865 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli2g01940 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
88615 Fli2g01471 Fli2g01940
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr2:35467148 Fli2g02435 Fli-Chr2:46145644 dispersed
Fli Fli-Chr15:54091153 Fli2g01940 Fli-Chr2:35467148 transposed
Fli Fli-Chr8:8141779 Fli2g01940 Fli-Chr2:35467148 transposed
Fli Fli-Chr12:66925206 Fli2g01940 Fli-Chr2:35467148 wgd
Fli Fli-Chr15:60817954 Fli2g01940 Fli-Chr2:35467148 wgd
Fli Fli-Chr2:26674333 Fli2g01940 Fli-Chr2:35467148 wgd