AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli2g01963 ATGGATTTCACAATCCCCATTTCATCTACACCAACACTACCAATATTCTTCACAATGTTCCTTACAATCTACTTGATCGCCCACTTCATCGTCTTCCGCAATTGGAGCCCCAAGCTCCGACCCGAAGCCGCCAGCTGCTTAATTTCACTCGCCCACGGCACTCCGGCGGTGGTTCTCGCCGGCGCCGCCATCGTCTCCGACCCCACACATGGGTTTGCCTCAATCAACACCCAATTTCAAAACTCCGTCCTTGAATACAGCATTGCATACTTCTTGATGGACCTCTGTCACTATCTAACATTTTACCCTAACGATATCCTCTTCATAAGTCACCATCTGGCGACCCTCTTCGTTTTCATCACCTGTAGATATCTTGCGTTACATGGGGCGTATGCGGTGTTGATTTTGCTTGTGTTGGCGGAGATTACGAGCTTCTTGCAGAACTTGTGGACGCTGGCGAATGCGAGAAGAGGGGATTCAGAAGTTGCAGCCCAGGTGTTTGATCTATTGTCTCTTCCATTTTATGCTTTGTATTCTGTTGTTAGAGGGTTTGCTGCACCTTTGTTTGTGTACAAAATGATTGCTTTTTATTCAAGTGGTGCTGCTGATCATGTTGTTCCTAAGTGGCTTTGGGTTTCTTGGATGTGTGTTGTTGTTATGGCGATTTCGGTTAGTGTTCTTTGGATTTCGAATAATTGGATCACCTTGTTTAGAGAAAGAATGATTAAGATTGAGAAGGAGAAGAAAGTTAGGTAG 756 45.37 MDFTIPISSTPTLPIFFTMFLTIYLIAHFIVFRNWSPKLRPEAASCLISLAHGTPAVVLAGAAIVSDPTHGFASINTQFQNSVLEYSIAYFLMDLCHYLTFYPNDILFISHHLATLFVFITCRYLALHGAYAVLILLVLAEITSFLQNLWTLANARRGDSEVAAQVFDLLSLPFYALYSVVRGFAAPLFVYKMIAFYSSGAADHVVPKWLWVSWMCVVVMAISVSVLWISNNWITLFRERMIKIEKEKKVR 251
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli2g01963 251 Pfam TLC domain 44 230 IPR006634 GO:0016020(InterPro)
Fli2g01963 251 PANTHER GLABROUS1 ENHANCER-BINDING PROTEIN-LIKE 2 7 247 IPR040327 -
Fli2g01963 251 SMART lag1-27 38 241 IPR006634 GO:0016020(InterPro)
Fli2g01963 251 ProSiteProfiles TLC domain profile. 38 246 IPR006634 GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli2g01963 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
88606 Fli2g01426 Fli2g01963
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr2:25947239 Fli2g01963 Fli-Chr2:35749458 transposed
Fli Fli-Chr2:35749458 Fli5g00638 Fli-Chr5:10783672 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fli2g01426 ACH 328 572 GeBP Transcription Factor family AT5G14280 62.449 9.87e-105 313.0
Fli2g01963 ACH 319 572 GeBP Transcription Factor family AT5G14280 61.417 1.69e-106 317.0
Fli2g02614 . 68 361 GeBP Transcription Factor family AT4G00390 32.121 5.57e-30 116.0
Fli3g00489 . 77 425 GeBP Transcription Factor family AT5G28040 46.739 4.58e-85 263.0
Fli3g01589 . 65 368 GeBP Transcription Factor family AT1G61730 31.818 1.06e-33 127.0
Fli5g00638 . 331 566 GeBP Transcription Factor family AT5G14280 51.046 7.99e-76 238.0
Fli6g01068 . 74 422 GeBP Transcription Factor family AT5G28040 44.715 8.05e-81 253.0
Fli9g01606 . 121 368 GeBP Transcription Factor family AT1G61730 36.398 9.40e-33 127.0
Fli12g01908 . 169 280 GeBP Transcription Factor family AT4G00390 39.831 3.29e-19 82.4