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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00564 ATGTTTTTCAATGCACAATTCACAATGTCAAGCACATGCGAAGGTAAGAGTTCATGGCCTGAACTTGTAGGCGCGAGGGGAGACGTAGCGGTTGCTACGATTGAGAGAGAGAACCCACGGGTCGATGCTATTATTGTCTTGGAGGGGTCAATTGTGACACCTGATTTCCGATGCGACCGTGTACGGGTGTGGGTGAATCGTAGTGGGGTGGTCGTTAGGCTTCCTTCCATTGGGTAA 237 50.21 MFFNAQFTMSSTCEGKSSWPELVGARGDVAVATIERENPRVDAIIVLEGSIVTPDFRCDRVRVWVNRSGVVVRLPSIG 78
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00564 78 Pfam Potato inhibitor I family 16 78 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00564 78 Gene3D Trypsin Inhibitor V, subunit A 9 77 - -
Fli3g00564 78 PRINTS Potato inhibitor I signature 55 65 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00564 78 PRINTS Potato inhibitor I signature 43 54 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00564 78 PRINTS Potato inhibitor I signature 18 31 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00564 78 SUPERFAMILY CI-2 family of serine protease inhibitors 12 78 IPR036354 -
Fli3g00564 78 ProSitePatterns Potato inhibitor I family signature. 19 30 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00564 78 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 11 78 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00564 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr3:13920115 Fli3g00572 Fli-Chr3:14164488 dispersed
Fli Fli-Chr3:13920115 Fli3g00566 Fli-Chr3:14015455 proximal
Fli Fli-Chr18:54215909 Fli3g00564 Fli-Chr3:13920115 wgd