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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00571 ATGCACTTCAAACATCATCTGATAATGACAGACTGCAAAGGAAAGAGTTCATGGCCAGAGTTGGTAGGGTCGGACGGGGAAGCAGCCGCGGCCAAAATTGAGAAAGAGAATCCACGTGTTGATGCTATTGTGCTATTGGAAGGAAGTCCTACCACTCTGGAGTTTCGGTGCAATCGTGTGTGGGTGTGGGTAGACTCTCATGGGGTTGTCATTCGAACTCCTAAAATCGGCTAA 234 48.29 MHFKHHLIMTDCKGKSSWPELVGSDGEAAAAKIEKENPRVDAIVLLEGSPTTLEFRCNRVWVWVDSHGVVIRTPKIG 77
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00571 77 Gene3D Trypsin Inhibitor V, subunit A 9 76 - -
Fli3g00571 77 PRINTS Potato inhibitor I signature 42 53 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00571 77 PRINTS Potato inhibitor I signature 54 64 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00571 77 PRINTS Potato inhibitor I signature 17 30 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00571 77 Pfam Potato inhibitor I family 15 77 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00571 77 ProSitePatterns Potato inhibitor I family signature. 18 29 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00571 77 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 12 77 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00571 77 SUPERFAMILY CI-2 family of serine protease inhibitors 11 77 IPR036354 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00571 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr18:54281817 Fli3g00571 Fli-Chr3:14088077 dispersed
Fli Fli-Chr3:14015455 Fli3g00571 Fli-Chr3:14088077 dispersed
Fli Fli-Chr3:14088077 Fli3g00577 Fli-Chr3:14411514 dispersed
Fli Fli-Chr3:14044870 Fli3g00571 Fli-Chr3:14088077 tandem
Fli Fli-Chr3:14088077 Fli3g00572 Fli-Chr3:14164488 tandem