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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00575 ATGGCAACAGTCTGCAAAGGAAAGAGTTCATGGCCGGAGCTTGTAGGGGCAACTGGAGAAGTTGCGGCCGCTATGATTGAGGAAGAGAATCCACACGTCAATGCTATTGTGGTATTGGAAGGAACTCCCGTCACTGCGGACTTCCGGTGTGACCGTGTGCGGGTGTTTGTGAACTCTAAGGGAGTGGTGATTCAAACGCCTATCATTACATGA 213 50.7 MATVCKGKSSWPELVGATGEVAAAMIEEENPHVNAIVVLEGTPVTADFRCDRVRVFVNSKGVVIQTPIIT 70
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00575 70 PRINTS Potato inhibitor I signature 10 23 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00575 70 PRINTS Potato inhibitor I signature 47 57 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00575 70 PRINTS Potato inhibitor I signature 35 46 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00575 70 SUPERFAMILY CI-2 family of serine protease inhibitors 4 69 IPR036354 -
Fli3g00575 70 Gene3D Trypsin Inhibitor V, subunit A 2 70 - -
Fli3g00575 70 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 6 69 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00575 70 Pfam Potato inhibitor I family 8 69 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fli3g00575 70 ProSitePatterns Potato inhibitor I family signature. 11 22 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00575 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr18:54215909 Fli3g00575 Fli-Chr3:14333306 dispersed
Fli Fli-Chr3:14333306 Fli3g00577 Fli-Chr3:14411514 proximal
Fli Fli-Chr3:14234705 Fli3g00575 Fli-Chr3:14333306 tandem