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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00585 ATGGCATCTATCTCAGCTTCTATCTCCACCACCTCACCATCATTCTCTCTTCTCCAAAAGCCCACTATCACCTCCCATGGTTCTCCGGTTATCGGGTTGCCATCAATGAGCAAGATGGGGAGAGTGAGATGTTCAATGGAAAATAAGCCCGTTGTGACATCCAACGACGGTGCACGCATGGTTACACCGTCGTTGATGGCTGCAGCACTGGCTGCAGTCATGTCGAGCCCGGCCGCCCAGGCTCTTGTGGACGAGAGAATGAGCACCGAAGGGACCGGGCTACCGTTCGGTCTGAGCAACAACCTTCTTGGGTGGATTCTTTTTGGGGTTTTTGGGTTGATTTGGACACTTTACTTTGTGTACGTTGGTGCCCTTGATGAGGATGAGGAGTCTGGTTTATCGCTTTAA 408 51.47 MASISASISTTSPSFSLLQKPTITSHGSPVIGLPSMSKMGRVRCSMENKPVVTSNDGARMVTPSLMAAALAAVMSSPAAQALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTLYFVYVGALDEDEESGLSL 135
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00585 135 Pfam Photosystem II reaction centre W protein (PsbW) 1 135 IPR009806 GO:0009507(InterPro)|GO:0009523(InterPro)|GO:0015979(InterPro)
Fli3g00585 135 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 135 IPR009806 GO:0009507(InterPro)|GO:0009523(InterPro)|GO:0009535(PANTHER)|GO:0015979(InterPro)|GO:0042549(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00585 K02721 photosystem II PsbW protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr3:14724459 Fli7g01698 Fli-Chr7:82419904 dispersed
Fli Fli-Chr3:14724459 Fli3g00586 Fli-Chr3:14730406 tandem