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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00621 ATGGTGAATGATCAAAGTATTGATCGCATAATTTGTTGGAGCAGAGGAGGTCAAAGCTTTGTTGTGTTGGATCCACATGCTTTTTCTACTAATCTTCTACCAAGATACTTTAAGCACAATAATTTCTCTAGCTTTGTGAGGCAGCTCAATACTTATGGATTTAGAAAGATTGATCCTGAGACATGGGAGTTTGCAAATGAAGCATTTGTGAGAGGCCAAAGGCATGTTCTAAAGAACATTAAAAGAAGAAGAACACCTAGTTCTCAAGCTTTATCTCCAACACAAAATCCAACACTTGTTAATGAAATTGGAAAATCCAATTTAGATGAAGTTGGTCATTTAAAACATGAAAAACAAGTTCTTATGATGGAATTAGTGAAGCTTAAACAACAACAACAAACCACTCGAGCCCAACTTCAAGCGATGGAGCTACGATTACAAGGAACCGAGAAAAAACAACAAAAGATGATGAATTTCTTGGCAAAAGCTATGCAAAATCCTGACTTTGTGCAGAAATTAGTCGAACATGGTAAACGGAAGGAGTTTCAAGAAACCATCAAGAACCAGATTGGTGAATCAAGCCAAATGGGTAGTGGGTCTAAGTTGATTAAAGCTGAACCTGAGGAATTCATGGATAATTCATCATTTCAATTGTCTGAACTTGAGGCACTTGCTTTAGAGATTCAAGGGTTTGGTAGGTCGAAAAGAAATCAAGACGAAGAACAACAACGTAGTGATATTGAATTTGAAGGTGGGGAGAAAGAACTTGATGATGAATTCTGGGAAGAGTTGTTTAGTGAGAGGCCTGATGAACAATCTGCTGATGATGTGAATTTCTTGGCTGATAAGTTGGATTTCTTGGGCTCGAGCCCAAAGTAG 879 37.77 MVNDQSIDRIICWSRGGQSFVVLDPHAFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPETWEFANEAFVRGQRHVLKNIKRRRTPSSQALSPTQNPTLVNEIGKSNLDEVGHLKHEKQVLMMELVKLKQQQQTTRAQLQAMELRLQGTEKKQQKMMNFLAKAMQNPDFVQKLVEHGKRKEFQETIKNQIGESSQMGSGSKLIKAEPEEFMDNSSFQLSELEALALEIQGFGRSKRNQDEEQQRSDIEFEGGEKELDDEFWEELFSERPDEQSADDVNFLADKLDFLGSSPK 292
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00621 292 MobiDBLite consensus disorder prediction 234 255 - -
Fli3g00621 292 Gene3D - 1 84 IPR036388 -
Fli3g00621 292 ProSitePatterns HSF-type DNA-binding domain signature. 33 57 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Fli3g00621 292 PRINTS Heat shock factor (HSF) domain signature 45 57 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Fli3g00621 292 PRINTS Heat shock factor (HSF) domain signature 32 44 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Fli3g00621 292 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 274 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Fli3g00621 292 Coils Coil 125 152 - -
Fli3g00621 292 FunFam Heat stress transcription factor B-4 1 84 - -
Fli3g00621 292 SMART hsfneu3 1 83 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Fli3g00621 292 MobiDBLite consensus disorder prediction 234 251 - -
Fli3g00621 292 Pfam HSF-type DNA-binding 1 83 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Fli3g00621 292 SUPERFAMILY Winged helix DNA-binding domain 1 83 IPR036390 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00621 K09419 heat shock transcription factor, other eukaryote
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr1:110761449 Fli3g00621 Fli-Chr3:16037759 dispersed
Fli Fli-Chr3:16037759 Fli4g01723 Fli-Chr4:89771283 dispersed
Fli Fli-Chr3:16037759 Fli18g00958 Fli-Chr18:42538626 transposed
Fli Fli-Chr3:16037759 Fli14g00819 Fli-Chr14:15056895 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fli1g02599 . 42 376 Heat shock transcription factors Hsfs gene family AT3G22830 51.343 9.72e-107 315.0
Fli1g02821 . 1 344 Heat shock transcription factors Hsfs gene family AT5G45710 41.417 6.05e-82 251.0
Fli1g03310 . 31 231 Heat shock transcription factors Hsfs gene family AT2G26150 32.432 4.00e-28 108.0
Fli2g00766 . 1 343 Heat shock transcription factors Hsfs gene family AT1G46264 50.802 9.59e-107 314.0
Fli2g01139 . 7 283 Heat shock transcription factors Hsfs gene family AT4G36990 51.557 1.36e-85 256.0
Fli2g02732 . 8 344 Heat shock transcription factors Hsfs gene family AT5G45710 43.767 6.58e-87 263.0
Fli3g00621 . 37 265 Heat shock transcription factors Hsfs gene family AT3G51910 49.084 2.49e-78 237.0
Fli3g01790 . 24 466 Heat shock transcription factors Hsfs gene family AT4G13980 50.549 4.20e-131 385.0
Fli4g00125 . 20 195 Heat shock transcription factors Hsfs gene family AT3G24520 65.946 2.00e-75 231.0
Fli4g01109 . 3 61 Heat shock transcription factors Hsfs gene family AT5G62020 62.5 1.55e-19 80.1
Fli4g01723 . 31 343 Heat shock transcription factors Hsfs gene family AT2G26150 53.988 1.55e-112 329.0
Fli5g00294 . 17 209 Heat shock transcription factors Hsfs gene family AT1G67970 51.208 2.90e-70 218.0
Fli5g00295 . 17 299 Heat shock transcription factors Hsfs gene family AT1G67970 41.806 9.47e-69 218.0
Fli5g01500 . 1 343 Heat shock transcription factors Hsfs gene family AT1G46264 53.552 3.49e-111 326.0
Fli6g02423 . 12 267 Heat shock transcription factors Hsfs gene family AT5G62020 52.817 1.75e-94 281.0
Fli7g00347 . 29 343 Heat shock transcription factors Hsfs gene family AT1G46264 55.78 5.40e-113 330.0
Fli7g01145 . 38 244 Heat shock transcription factors Hsfs gene family AT2G41690 52.885 4.12e-64 197.0
Fli8g00387 . 1 397 Heat shock transcription factors Hsfs gene family AT4G18880 42.569 2.32e-91 278.0
Fli8g00811 . 1 401 Heat shock transcription factors Hsfs gene family AT4G18880 44.472 2.05e-88 271.0
Fli9g01676 . 24 466 Heat shock transcription factors Hsfs gene family AT4G13980 50.333 7.54e-134 392.0
Fli9g02005 . 2 261 Heat shock transcription factors Hsfs gene family AT5G03720 51.145 6.00e-84 260.0
Fli10g00103 . 14 199 Heat shock transcription factors Hsfs gene family AT3G24520 58.247 4.18e-74 228.0
Fli11g00134 . 144 196 Heat shock transcription factors Hsfs gene family AT3G24520 37.736 8.76e-06 42.0
Fli11g00477 . 17 268 Heat shock transcription factors Hsfs gene family AT5G03720 55.906 3.22e-83 257.0
Fli12g00695 . 7 268 Heat shock transcription factors Hsfs gene family AT4G36990 49.248 1.31e-68 212.0
Fli12g01524 . 7 477 Heat shock transcription factors Hsfs gene family AT1G32330 50.302 1.01e-136 401.0
Fli14g00819 . 4 477 Heat shock transcription factors Hsfs gene family AT1G32330 49.9 2.61e-138 405.0
Fli17g00522 . 3 128 Heat shock transcription factors Hsfs gene family AT5G62020 70.769 7.22e-60 187.0
Fli18g00958 . 31 343 Heat shock transcription factors Hsfs gene family AT2G26150 53.067 8.64e-111 325.0
Fli10000620.1g00007 . 51 142 Heat shock transcription factors Hsfs gene family AT4G17750 76.087 7.58e-50 164.0
Fli10000620.1g00008 . 180 366 Heat shock transcription factors Hsfs gene family AT4G18880 28.571 1.90e-15 71.6
Fli10000711.1g00002 . 3 267 Heat shock transcription factors Hsfs gene family AT5G62020 52.632 3.29e-90 268.0
Fli10000626.1g00004 . 180 366 Heat shock transcription factors Hsfs gene family AT4G18880 28.042 2.28e-14 68.6
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fli HSF_DNA-bind 3.2e-29 CL0123 TF HSF