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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00642 ATGCCGACCACCTTCGAACGCAACCTCCACCTCTGCTTCACCAAACTCAAACGCCACCACTCCCCACCACCACCACCACCACCACCACCATCACAGCACCGCCACCGCCACCACCACCACGGCCACCGTCGCCACCACTCCGAAACCACCCTCATCAAAAACTTCAACACCCTCTACGACCTCCCCCCCGCCTCCGCCTCCGACGACGACGCTGCCTCCGCCACCACCACCGCCGCCGCCGACTTCTCCACCGTCGTGGCCTCCGACCGCTTCTTCTTCTCCTCCCCCGGCCGCTCCAACTCCATCGTCGACTCCTCCTCCTCCTCCGTCGCCTCCACCTCCTTCACCGGCGCCGGCGACTGCGACGCCGTCAACGGCGGCGTCGCCATCCCGACGATCTCGCCGGACCCCTACTTTGACTTCAGAAGATCTATGCAGGAGATGGTGGAGGCACGTGACCTCATCGATGTGCGTGCCGATTGGGGTTATTTGCACGAGCTTCTCACGTGCTACCTTGATTTGAACCCCAAGAGTGCTCATAAGTTTATTGTTGGAGCTTTTGCGGATCTTCTGGTGTCTCTCATGGCGGAAGACGGTGGTCGTCGCCGGAGAATTTGA 618 61.65 MPTTFERNLHLCFTKLKRHHSPPPPPPPPPSQHRHRHHHHGHRRHHSETTLIKNFNTLYDLPPASASDDDAASATTTAAADFSTVVASDRFFFSSPGRSNSIVDSSSSSVASTSFTGAGDCDAVNGGVAIPTISPDPYFDFRRSMQEMVEARDLIDVRADWGYLHELLTCYLDLNPKSAHKFIVGAFADLLVSLMAEDGGRRRRI 205
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00642 205 MobiDBLite consensus disorder prediction 16 47 - -
Fli3g00642 205 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 32 195 IPR038933 GO:0045892(InterPro)
Fli3g00642 205 Pfam Transcriptional repressor, ovate 134 194 IPR006458 -
Fli3g00642 205 MobiDBLite consensus disorder prediction 31 47 - -
Fli3g00642 205 NCBIfam uncharacterized plant-specific domain TIGR01568 131 195 IPR006458 -
Fli3g00642 205 ProSiteProfiles OVATE domain profile. 130 193 IPR006458 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00642 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr3:16942635 Fli6g02020 Fli-Chr6:85464912 dispersed
Fli Fli-Chr3:16942635 Fli13g00395 Fli-Chr13:8369647 transposed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fli Ovate 3.8e-24 No_clan TF OFP