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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00693 ATGGGTGCAGCTCCATCTGTTCCTCAAAATTCAATTCACGAGTTCACTGTCAAGGATTGCAAAGGGAAGGATGTAGATCTCAGCATCTACAAGGGCAAAGTGCTTCTGGTTGTTAATGTTGCTTCCAAATGTGGGTTTACGAACTCTAATTACCCGAAATTGGCTGAGCTTTACAGAAGGTATAAAGATAAAGGGCTCGAGATCTTGGCATTTCCATGCAACCAGTTCTTGTCCCAAGAACCCGAATCAAGTGAGAAAGTGGAAGAATTTGCATGCTCAAGGTTTAATGTTGAATTTCCCATCTTCCAAAAGATTCGTGTCAACGGGCCCAAGGCAGAACCTGTGTACAAGTTTCTTAAAGCCAAGAAAAGAGGGTTTTGCGGGTCAAGAATCAAATGGAACTTCACAAAGTTCCTTGTGGATAAAGAAGGCCGAGTCATAGGCCGTTATGGACCATCTACTTCACCATTATCCATCGAGGGTGATATTCAGAAGGCATTGAACGCGCAATGA 513 43.27 MGAAPSVPQNSIHEFTVKDCKGKDVDLSIYKGKVLLVVNVASKCGFTNSNYPKLAELYRRYKDKGLEILAFPCNQFLSQEPESSEKVEEFACSRFNVEFPIFQKIRVNGPKAEPVYKFLKAKKRGFCGSRIKWNFTKFLVDKEGRVIGRYGPSTSPLSIEGDIQKALNAQ 170
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00693 170 ProSitePatterns Glutathione peroxidases signature 2. 69 76 IPR029760 -
Fli3g00693 170 SUPERFAMILY Thioredoxin-like 11 167 IPR036249 -
Fli3g00693 170 ProSitePatterns Glutathione peroxidases active site. 32 47 IPR029759 -
Fli3g00693 170 PRINTS Glutathione peroxidase family signature 30 47 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Fli3g00693 170 PRINTS Glutathione peroxidase family signature 66 82 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Fli3g00693 170 PRINTS Glutathione peroxidase family signature 131 140 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Fli3g00693 170 PANTHER GLUTATHIONE PEROXIDASE 8 168 IPR000889 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0005829(PANTHER)|GO:0006979(InterPro)
Fli3g00693 170 CDD GSH-Peroxidase 11 163 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Fli3g00693 170 ProSiteProfiles Glutathione peroxidase profile. 2 170 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Fli3g00693 170 ProSiteProfiles Thioredoxin domain profile. 6 170 IPR013766 -
Fli3g00693 170 FunFam Glutathione peroxidase 3 169 - -
Fli3g00693 170 PIRSF Glutathion-perox 3 170 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Fli3g00693 170 Gene3D Glutaredoxin 5 169 - -
Fli3g00693 170 Pfam Glutathione peroxidase 12 120 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00693 K00432 glutathione peroxidase [EC:1.11.1.9]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr3:18675635 Fli4g01843 Fli-Chr4:92358602 dispersed
Fli Fli-Chr3:18675635 Fli14g00115 Fli-Chr14:2335953 transposed