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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00705 ATGGCTAAAAAGCTCATCAAATACTTTGTTGTGGACGCTTTTACGGACACCGCATTTAAGGGAAACCCTGCGGTGGTGTGTTGGTTAGACGATGTAGTGAAAGATGATAAGTGGTTGCAATCAGTTGCCTCTGAATTCAATCTTCCGATGACAGGTTACTTGACTCTGATTGATGCGGGTGAGCCTCGATTCCAGCTTCGATGGTTTGCTCCTGTCTCTGAGTTTGAACTTTGTGGTCATGCAACTTTAGCAGCCTCCCATGTTCTTTTCCGATCGGGCATGGTGGACTCTAACACGATTGAATTCTCAACGCTTTCTGGAATTTTGACAGCCAAAAGAACGCTGAATGAAAAGGCTGAATGTGAACCACAAGACAGTTTCCACATAGAATTGGATATGCCAATTGTTCCTATTTCAGATTACAATGATCTTGTGGTTTCTAAAATTTCAGAAATATTAAACGGTGTTGATGTTGTTGATGTTCTAAAGAAGAATGCATTTGATGACATTATTGTGGTGCTTCCATCCGGAGAAGATGTTGTAGCCTTCAAGCCACAATTTAGTAAGATCAAAGAAGCTCCTGGTAGAGCGATAATAATTACAGCATGTGCACCTAACGGGTCGGGGTTCGACTTTTATACTCGTGTTTTCTGCCCTAAATATGGAATTGATGAGGATCCTGTTTGTGGGAGCGCCCATTGCGCCTTAGTAACCTACTGGCATGAGAAGTTAGGGAAATGTGACTTTGTCGCATATCAGGCATCACGTAGAAGTGGCATATTACATATCCATCTCGATAAGCAGCATCAAAGAGTACGCCTTCGAGGTAAAGCCACAACAGTCATGGAAGGGTATCTTTCGGTCTAA 867 42.68 MAKKLIKYFVVDAFTDTAFKGNPAVVCWLDDVVKDDKWLQSVASEFNLPMTGYLTLIDAGEPRFQLRWFAPVSEFELCGHATLAASHVLFRSGMVDSNTIEFSTLSGILTAKRTLNEKAECEPQDSFHIELDMPIVPISDYNDLVVSKISEILNGVDVVDVLKKNAFDDIIVVLPSGEDVVAFKPQFSKIKEAPGRAIIITACAPNGSGFDFYTRVFCPKYGIDEDPVCGSAHCALVTYWHEKLGKCDFVAYQASRRSGILHIHLDKQHQRVRLRGKATTVMEGYLSV 288
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00705 288 SUPERFAMILY Diaminopimelate epimerase-like 6 287 - -
Fli3g00705 288 Pfam Phenazine biosynthesis-like protein 11 284 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Fli3g00705 288 NCBIfam PhzF family phenazine biosynthesis isomerase 8 287 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Fli3g00705 288 PIRSF Ismrse-PhzF 4 288 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Fli3g00705 288 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 6 287 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Fli3g00705 288 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 9 284 - -
Fli3g00705 288 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 135 276 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00705 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr3:18960210 Fli3g00705 Fli-Chr3:19060182 dispersed
Fli Fli-Chr3:18973576 Fli3g00705 Fli-Chr3:19060182 tandem