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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00723 ATGCCTCGGTATTACTGTGATTACTGCGACACTTACTTGACGCATGATTCTCCTTCTGTAAGGAAGCAGCACAATGCAGGATACAAACACAAGGCAAATGTGCGGATCTATTATCAACAGTATGAGGCGCAACAAAATCAATATCTGATTGATCAAAAAGTTAAAGAGCATCTTGGACAAGCGGCTGCATATCAGCAAGTTGGTGCTGCTTACAACCAACTCAGACCTCGTCTTCCTGTATTACCTAATCCAATGATGCCAAATCCAATGATGCCAAATCCAATGATGCCAATGCCTGGAATGAGGCCACTAGCCCCTTTGCCGAGACCTATTCCTGGATATCCTGGCATGCCCCCAATGGTTGCTCCACCTGGTGCACCTGCCATCCCCGGTCAAGTCAACCCATCCATGCCCGGTCAGGTCAACCCATCCATGCCCGGTCAGGTCAACCCTTCTGTACCCAGTCAGGTCAACAATGGTGCGCCAAGGCCCATAACCGTTAGTGCCCCAACGATGGCCCCAGGGAGCTCAGGAACCCCTACTTCAGGTGCACCATCGCCAATGTTTAACCCAGCTATGTATCAGGCCAACCCGACAGCACCAACACCGGCATCTGGAGGTTTTGAAAGTCCAAATGCTAGTGCCCAACCTCAGGAGGCTAACCATTAA 669 50.37 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQYEAQQNQYLIDQKVKEHLGQAAAYQQVGAAYNQLRPRLPVLPNPMMPNPMMPNPMMPMPGMRPLAPLPRPIPGYPGMPPMVAPPGAPAIPGQVNPSMPGQVNPSMPGQVNPSVPSQVNNGAPRPITVSAPTMAPGSSGTPTSGAPSPMFNPAMYQANPTAPTPASGGFESPNASAQPQEANH 222
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00723 222 SMART ZnF-U1-5 1 37 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Fli3g00723 222 Gene3D Classic Zinc Finger 1 60 - -
Fli3g00723 222 MobiDBLite consensus disorder prediction 125 222 - -
Fli3g00723 222 MobiDBLite consensus disorder prediction 135 222 - -
Fli3g00723 222 Pfam U1 zinc finger 1 38 IPR013085 GO:0008270(InterPro)
Fli3g00723 222 SUPERFAMILY beta-beta-alpha zinc fingers 1 56 IPR036236 -
Fli3g00723 222 PIRSF U1-C 1 221 IPR017340 GO:0000387(InterPro)|GO:0000398(InterPro)|GO:0005685(InterPro)
Fli3g00723 222 FunFam U1 small nuclear ribonucleoprotein C 1 61 - -
Fli3g00723 222 Hamap U1 small nuclear ribonucleoprotein C [SNRPC]. 1 160 IPR017340 GO:0000387(InterPro)|GO:0000398(InterPro)|GO:0005685(InterPro)
Fli3g00723 222 ProSiteProfiles Zinc finger matrin-type profile. 4 36 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
Fli3g00723 222 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C 1 209 IPR017340 GO:0000387(InterPro)|GO:0000395(PANTHER)|GO:0000398(InterPro)|GO:0005685(PANTHER)|GO:0005685(InterPro)|GO:0030627(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00723 K11095 U1 small nuclear ribonucleoprotein C
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr3:19774766 Fli9g01400 Fli-Chr9:71357805 wgd