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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00729 ATGGCTTATTCGTTGGAGGAGGATGTGTTGGAGCATGTATTCTCGTTCATAACGTCGCATAAAGACCGTAACGCCGTTTCGTTGGTGTGTAAGTCGTGGTTTAGGATCGAGAGGTGGTGCCGGAAGAGGATTTTCATCGGAAACTGTTACGCCGTGAGTCCGACGATCATGATCAGGAGGTTTCCGGAGGTGAGATCTGTGGAGTTGAAAGGGAAACCGCATTTTGCTGACTTCAATTTGGTGCCGGAGGGTTGGGGAGGGTATTTTTACCCCTGGATCTGTGAAATGGCTAGGGCTTATCCGGGGTTAGAGGAGATTAAGCTTAAGCGGATGGTGGTTACTGATGAGAATTTGGAGCTGATCTCGAAATCGTTTGAGAATTTTAAGGTTTGGTGTTGTCTTCTTGTGAGGGTTTCAGTACCGACGGACTTGCTGCCATTGCTGCTAATTGCAGAAATCTGA 462 47.62 MAYSLEEDVLEHVFSFITSHKDRNAVSLVCKSWFRIERWCRKRIFIGNCYAVSPTIMIRRFPEVRSVELKGKPHFADFNLVPEGWGGYFYPWICEMARAYPGLEEIKLKRMVVTDENLELISKSFENFKVWCCLLVRVSVPTDLLPLLLIAEI 153
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00729 153 PANTHER F-BOX-TPR REPEAT PROTEIN POF3 5 122 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Fli3g00729 153 Pfam F-box 4 43 IPR041567 -
Fli3g00729 153 Gene3D Ribonuclease Inhibitor 42 141 IPR032675 -
Fli3g00729 153 FunFam Transport inhibitor response 1 1 41 - -
Fli3g00729 153 SUPERFAMILY F-box domain 5 42 IPR036047 GO:0005515(InterPro)
Fli3g00729 153 Pfam Transport inhibitor response 1 protein domain 62 108 IPR041101 -
Fli3g00729 153 SMART fbox-2 5 46 IPR001810 GO:0005515(InterPro)
Fli3g00729 153 Gene3D - 1 41 - -
Fli3g00729 153 CDD F-box-AtTIR1-like 4 41 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00729 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr3:20041398 Fli5g02379 Fli-Chr5:91207218 dispersed
Fli Fli-Chr3:20041398 Fli16g01643 Fli-Chr16:58094717 transposed