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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00917 ATGTCTGCTTTCATGGCATTCAAGTTGTCGTCTTTCTCATCCTCTGTTCCATCAACTCCTGCATATTCTTCAATTTCATTTCCTTCACCAAACTTCTTTCTTCCAGTGAAGCTTTCTCCCCGCCGATCTACGTTCCCAAGAATTTATGCGTTTTCTAGTAATGATATAAAGGTGGGTTCCAACATTGAGGTAGATGGAGCTCCTTGGAAGGTTCTAGAGTTTCTTCATGTTAAACCTGGTAAAGGGGCTGCTTATGTGAGGACCACACTACGGAATCATATAACAGGAAACACTGTTGAAAAAACTTTCCGAGCTGGAAGCAAGATTGAACAAGCTGAGATTTCTAAGGAGACGAAGCAATTCACATACAAGGACGGTTCACAATTTGTTTTCATGGATCTGACTTCATATGAGGAAGTTCGTCTTAACGAGTCAGATATGGGAGATAAGACGAAATGGCTAAAAGAAGGCATGGATTGCAATTTGCTATTTTGGAAGGGAAAGGTTATCGATTTTGAGCTCCCAATACAGGTTAAAGTGAAAATAGTAGATGTTGATCCTGGTGTGAAAGGTGACGCGGCTCAAGGTGGATCAAAACCAGCAACTGTGGAAACTGGTGCTGTTGTTTATGTACCTTTGTTTGTAGACAGGGATCAAGAAATTATCGTCGATACAAGAACAGGCCAGTATGTGAGTCGGGTATGA 705 41.42 MSAFMAFKLSSFSSSVPSTPAYSSISFPSPNFFLPVKLSPRRSTFPRIYAFSSNDIKVGSNIEVDGAPWKVLEFLHVKPGKGAAYVRTTLRNHITGNTVEKTFRAGSKIEQAEISKETKQFTYKDGSQFVFMDLTSYEEVRLNESDMGDKTKWLKEGMDCNLLFWKGKVIDFELPIQVKVKIVDVDPGVKGDAAQGGSKPATVETGAVVYVPLFVDRDQEIIVDTRTGQYVSRV 234
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00917 234 Gene3D - 113 175 IPR012340 -
Fli3g00917 234 FunFam Organellar elongation factor P 44 112 - -
Fli3g00917 234 Hamap Elongation factor P [efp]. 50 234 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Fli3g00917 234 FunFam Elongation factor P 113 176 - -
Fli3g00917 234 SMART EFP-2 116 170 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Fli3g00917 234 FunFam Elongation factor P 177 234 - -
Fli3g00917 234 Gene3D - 177 234 IPR012340 -
Fli3g00917 234 PANTHER ELONGATION FACTOR P 39 234 IPR020599 GO:0003746(PANTHER)|GO:0005737(PANTHER)
Fli3g00917 234 Pfam Elongation factor P (EF-P) KOW-like domain 52 109 IPR013185 -
Fli3g00917 234 SUPERFAMILY Nucleic acid-binding proteins 178 234 IPR012340 -
Fli3g00917 234 SUPERFAMILY Nucleic acid-binding proteins 114 178 IPR012340 -
Fli3g00917 234 ProSitePatterns Elongation factor P signature. 199 218 IPR013852 -
Fli3g00917 234 NCBIfam elongation factor P 52 234 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Fli3g00917 234 Gene3D - 44 112 IPR014722 -
Fli3g00917 234 CDD S1-EF-P-repeat-1 120 175 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Fli3g00917 234 CDD S1-EF-P-repeat-2 178 233 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Fli3g00917 234 Pfam Elongation factor P, C-terminal 178 233 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Fli3g00917 234 Pfam Elongation factor P (EF-P) OB domain 120 170 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Fli3g00917 234 SUPERFAMILY Translation proteins SH3-like domain 47 110 IPR008991 -
Fli3g00917 234 SMART Elong-fact-P-C-2 178 233 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00917 K02356 elongation factor P
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Event-related genes

Select Gene_1 Gene_2 Event_name
392419 Fli3g00917 Fli9g01360
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2370515 Fli Fli3g00917 Fli-Chr3:25366339 Fli9g01360 Fli-Chr9:70424862