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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli5g00476 ATGCCGACGTTGACGAAGCTATACACTATGAAAGAAGCTTCAGAGCACAATTCCGCCGGTGATTGCTGGATTGTTGTCGACGGCAAGGTGTATGATGTATCATCATATCTTGAAGAGCACCCAGGTGGTGATGATGTCATCCTCCAGGCTACAGGGAAGGATGCCACAGATGAATTTGAAGACGCGGGCCATAGCAAGAGTGCTAGGGAACTTATGGAGACATTTTGTGTTGGTGAACTGGATCCGTCAGACGTCCCTCAACTTAAAGTTGTCTCAGATAAACAAAAGACTTACATGACTGAGAAGCTGGTTCACCTCAGTAAGCAATACTGGTTAGCTCCGGTGGCAGTTGTTGGCATATCTGTTGTGATCACTTTCTTGTACTTACGCAAGAAGTAG 399 46.12 MPTLTKLYTMKEASEHNSAGDCWIVVDGKVYDVSSYLEEHPGGDDVILQATGKDATDEFEDAGHSKSARELMETFCVGELDPSDVPQLKVVSDKQKTYMTEKLVHLSKQYWLAPVAVVGISVVITFLYLRKK 132
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli5g00476 132 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Fli5g00476 132 Gene3D - 3 87 IPR036400 -
Fli5g00476 132 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Fli5g00476 132 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Fli5g00476 132 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Fli5g00476 132 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Fli5g00476 132 SMART Cyt-b5-2 8 81 IPR001199 -
Fli5g00476 132 FunFam Cytochrome b5 type B 3 85 - -
Fli5g00476 132 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Fli5g00476 132 Pfam Cytochrome b5-like Heme-Steroid binding domain 9 81 IPR001199 -
Fli5g00476 132 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 4 91 IPR036400 -
Fli5g00476 132 PANTHER CYTOCHROME B5 4 127 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli5g00476 K23490 cytochrome b5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2373537 Fli Fli5g00476 Fli-Chr5:8014431 Fli8g00092 Fli-Chr8:1920255
2389598 Fli Fli5g00476 Fli-Chr5:8014431 Fli1g02408 Fli-Chr1:107557252
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fli1g01461 . 2 120 NADPH P450 reductases gene family AT1G60660 62.185 1.11e-49 152.0
Fli1g02243 ACH,WGDA 31 281 NADPH P450 reductases gene family AT5G17770 82.47 8.25e-162 449.0
Fli1g02408 ACH,WGDA 5 133 NADPH P450 reductases gene family AT2G32720 75.194 1.54e-72 211.0
Fli2g01569 WGDA 38 273 NADPH P450 reductases gene family AT5G17770 39.419 3.71e-46 162.0
Fli3g01380 . 6 83 NADPH P450 reductases gene family AT1G26340 38.462 4.05e-14 65.1
Fli5g00476 . 1 134 NADPH P450 reductases gene family AT1G26340 59.701 1.06e-58 176.0
Fli7g00705 . 31 87 NADPH P450 reductases gene family AT5G17770 71.93 2.05e-22 85.9
Fli8g00092 . 1 126 NADPH P450 reductases gene family AT2G32720 43.382 5.04e-38 124.0
Fli9g01130 . 31 281 NADPH P450 reductases gene family AT5G17770 75.299 8.98e-143 400.0
Fli10g01706 . 1 133 NADPH P450 reductases gene family AT5G53560 72.932 2.01e-71 208.0
Fli14g00135 . 5 78 NADPH P450 reductases gene family AT5G48810 78.378 1.07e-41 130.0
Fli14g00467 . 1 134 NADPH P450 reductases gene family AT5G53560 56.716 3.89e-54 165.0
Fli14g00873 ACH,WGDA 7 133 NADPH P450 reductases gene family AT2G32720 74.803 6.51e-72 209.0
Fli14g00969 ACH,WGDA 30 281 NADPH P450 reductases gene family AT5G17770 82.937 6.05e-162 449.0
Fli15g00162 . 39 281 NADPH P450 reductases gene family AT5G17770 40.613 6.86e-64 202.0
Fli18g00464 . 3 132 NADPH P450 reductases gene family AT5G53560 57.252 3.43e-52 159.0