AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli5g00485 ATGGAAGAATCAAGAAATCCATTTCTTCACTCTAATGTTATTGAATCTGCTAATGGGTATAGCTCAAGATTCAACCCGGATAAACGTGGACGCCAGAACTTCATTGCTCCTGGTTTTCCAGGGTTGAAAAAACGAGGTCATGCACTTGGGAACCGTTCTTGGATTAAAATTGAGCAAAATGGAAACTCTAAAGTTGTGGAGTTAGATAAGGCTACTGTAATGAGACATTGTTCTTTACCTGCTAGAGATCTTCGTCTTTTGGATCCGCTTTTTATATATCCATCCACAATATTAGGTCGTGAGAAGGCTATTGTAGTTAGTCTCGAACAGATTAGATGTATAATCACAGCTGATGAGGTTTTTCTTATGAATTCATTGGACGGATCTGTAGTTCAGTACAAATCTGAATTGTGCAAACGCCTTCAGCAAGAGAAATATCACTCAGATGGCCTACCATTTGAGTTTAGAGCGTTGGAACTAGCTTTGGAGTTTGCATGCCTGACTCTGGATACTCAGGTGAAAGAGTTGGAAATGGAAATTCATCCTGTGCTTGATGAACTTGCAAAATCAATAAGTACTCTCAATCTTGAGCGTGTCCGTAGATTCAAAGGCCACCTTCTAGCATTGACTCAACGGGTGCAAAAGGTTTGTGATGAAATAGAACAGCTAATGAACGATGATGGTGATATGGCTGAGATGTACTTGACTGAGAAGAAACAAAGGAACTCATGTAACGATTTATATGATCAAGACCAAGGAAGTAATGTCGTCGGGCCTGGAGTGGGCTTAGGATCGAAATCTGCTCCTGTATCTCCTGTGGGGTCCACAAGTGGCACACATAAACTGCAAAGAGCGTTTAGTAATGTAAGTTCGCACAAACATGGAAGCTTGTTTGGTTCATCTGTTACTGGTGAAACTGAAAATATAGATCAACTCGAGATGTTGCTGGAAGCCTACTTTGTTGGAATTGATAATACTCTAAACAAGTTGCTTTCGCTCAAGGAGTATATTGATGACACTGAAGATCTGATCAACATTAAACTTGGAAATGTCCAGAATAAGCTGATTAAGTTCGAGCTGCTCTTGACTGCGGCTACTTTTCTGGCAACTGTATTTGCAGTCGTGACAGCTGTATTTGGAATGAACTTTGAAGATGAAGTTTTCGATGAGCCAAACAGATTCAATTGGGTTGTTTCTATCAGTGCAGCGTTATGTGGAATTTTGTACATCTGTTTCTTGCTTTATTTTAAACATAAGAAAGTTTTCCCTCTTTAG 1275 39.76 MEESRNPFLHSNVIESANGYSSRFNPDKRGRQNFIAPGFPGLKKRGHALGNRSWIKIEQNGNSKVVELDKATVMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVFLMNSLDGSVVQYKSELCKRLQQEKYHSDGLPFEFRALELALEFACLTLDTQVKELEMEIHPVLDELAKSISTLNLERVRRFKGHLLALTQRVQKVCDEIEQLMNDDGDMAEMYLTEKKQRNSCNDLYDQDQGSNVVGPGVGLGSKSAPVSPVGSTSGTHKLQRAFSNVSSHKHGSLFGSSVTGETENIDQLEMLLEAYFVGIDNTLNKLLSLKEYIDDTEDLINIKLGNVQNKLIKFELLLTAATFLATVFAVVTAVFGMNFEDEVFDEPNRFNWVVSISAALCGILYICFLLYFKHKKVFPL 424
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli5g00485 424 CDD Mrs2-Mfm1p-like 54 421 IPR039204 -
Fli5g00485 424 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 361 413 IPR045863 -
Fli5g00485 424 FunFam Magnesium transporter MRS2-1 41 125 - -
Fli5g00485 424 Gene3D Magnesium transport protein CorA, transmembrane region 128 355 - -
Fli5g00485 424 Pfam Magnesium transporter MRS2-like 59 242 - -
Fli5g00485 424 Coils Coil 206 226 - -
Fli5g00485 424 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 421 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Fli5g00485 424 Gene3D - 45 125 - -
Fli5g00485 424 Gene3D Magnesium transport protein CorA, transmembrane region 362 420 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli5g00485 K16075 magnesium transporter
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2367189 Fli Fli2g00237 Fli-Chr2:4740358 Fli5g00485 Fli-Chr5:8208127
2372415 Fli Fli4g01108 Fli-Chr4:75215615 Fli5g00485 Fli-Chr5:8208127
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fli1g00827 . 1 436 MRS2 gene family AT3G58970 64.592 0.0 556.0
Fli1g02443 . 390 484 MRS2 gene family AT3G19640 62.0 1.59e-34 121.0
Fli1g02449 . 390 484 MRS2 gene family AT3G19640 62.0 1.59e-34 121.0
Fli2g00237 . 1 442 MRS2 gene family AT1G16010 77.803 0.0 677.0
Fli2g02142 . 1 386 MRS2 gene family AT5G09690 72.237 0.0 553.0
Fli4g01108 ACH 47 484 MRS2 gene family AT3G19640 59.513 8.37e-178 505.0
Fli5g00485 . 1 421 MRS2 gene family AT2G03620 64.953 1.59e-178 503.0
Fli10g01033 ACH 47 484 MRS2 gene family AT3G19640 66.447 0.0 563.0
Fli17g00627 . 47 200 MRS2 gene family AT3G19640 62.424 4.48e-60 194.0
Fli17g01205 . 123 459 MRS2 gene family AT5G22830 76.036 1.79e-176 500.0
Fli10001300.1g00001 . 47 192 MRS2 gene family AT3G19640 58.228 8.21e-49 163.0