AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02216 ATGTTATGCTTCTCATCCATGGGTAAAACCGTCATCAACACGAAGAAGCTTCGCACGCCCGCAGAAGTGGTTCAAAAGACGCGATCCCTTCTTCTTTACTCCAAGAAATCTCTTGATGTCAACTCACAGATGACAGAATTGAACTCACTTATAAGGGAATTGAAGTTGATTCTTTATGGAGATGATAACTCTGAGCCTTCTGCAGAAGCTTGTGCACAGTTGACAGTTGAGTTCTATAGAGAAGATACATTGCGTCTGCTTATTATCTTTCTACCAAAGTTGAACTTAGAGGCCCGTAAAGATGCCACGCAAGTCGTCGCGAGCTTGCAAAGGCAGCCCTTGCCATCGCGATTCGAGGCCTCGAGATATTTGGAAGCTAATCTTGATCTTCTAGACATTCTCATATCCGGGTATGAGGATCCTCAATTGGCTCTTCATTATGGTAGGATGTTGAAGGAGTGTTTACGTCATCAGATCGCTGCAAGTTACTTGTTAGAACCAAGTCAACTGAAGAAATTTTTTGATTACATACAACATCCAAGTTTTGATATTGCTGCAGATGCTGCAGATGCATTCAAGGATCTTTTGACTAGACACAAGTCTACTGTGTCTGAATCTTTGTCCAAAAACTATTGCTGGTTTTTTACTGAAATGAACGAAAAGCTACTGAAATCTGAGAATTATATCACCAGAAGACAAGCCGTCAAGCTACTTGGATGCATATTGCTTGATCGCGCGAATTCTAGTGTTATGATGCGATATGTAAGCTCAAAAGATAACCTGATAATTCTAATGAATCTTCTAAGGGATCAAAGTAGAAATATTCAGATAGATGCTTTTCATGTATTCAAGCTTTTCGTAGCAAATGAAAATAAGCCTCGTGAAATAGTGAGCATACTTGTTACAAACAGAAGCAAGATTCTTCGTTTGCTTGGCGCTTTCGGTTATACAGAAGATGAAGTGTTTGAGACAGACAAAGTTCATGTGGTTAATAAACTAGCTGTACTGGAGCTTCAAGACTAA 1023 39.78 MLCFSSMGKTVINTKKLRTPAEVVQKTRSLLLYSKKSLDVNSQMTELNSLIRELKLILYGDDNSEPSAEACAQLTVEFYREDTLRLLIIFLPKLNLEARKDATQVVASLQRQPLPSRFEASRYLEANLDLLDILISGYEDPQLALHYGRMLKECLRHQIAASYLLEPSQLKKFFDYIQHPSFDIAADAADAFKDLLTRHKSTVSESLSKNYCWFFTEMNEKLLKSENYITRRQAVKLLGCILLDRANSSVMMRYVSSKDNLIILMNLLRDQSRNIQIDAFHVFKLFVANENKPREIVSILVTNRSKILRLLGAFGYTEDEVFETDKVHVVNKLAVLELQD 340
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02216 340 SUPERFAMILY ARM repeat 18 333 IPR016024 -
Fra11g02216 340 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 13 337 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
Fra11g02216 340 Pfam Mo25-like 15 336 IPR013878 -
Fra11g02216 340 Gene3D - 16 337 IPR011989 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02216 K08272 calcium binding protein 39
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:75328386 Fra8g01057 Fra-Chr8:10273869 dispersed