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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02323 ATGGCCTTCATCTCTAAGGTTCACAACTTCACCGGCGACTTTCAAACTCCGGCGACCGCTGTGCCACCAATGTGGTATGATGACACCGCTCCATCGGGCTTGTTAGACATGTATGGAGTCACAATGCCACAAGAATATGATGTCACTACACCGCTTTCTCGTTCTTCATCATGGAAGACTTCGTTCCCTGAGAGATTCGGGGTCTCCGAGATGGTGGTTCCGACGTCACCCATTGGATTCGGTAGCGTTCCGGTGGAAACCGACTATCAAAAAGTTGAACAGGATGATGTTTTTTGTAGCAGTGTTGGTTATGGTACCAACTCATGGTCAGCATACCCAACTGCAAGTACTAATTGGGAAACCGAGAGCCCGAAAACAAGAAAAGAAGTCGAAGAACCAACGTTGAAGATCAGGCGGTACTCGACCGAAGAAAGGAAGGACAAGATCATGAGGTATCTCAAGAAGAGAAACCAAAGGAACTTCAACAAAACCATTAAGTATGAATGCCGAAAGACGTTAGCAGACAAGCGCGTACGAGTGCGAGGGAGGTTCGCGAAGAACAACAACGATCATCATCAACCTTGTGAAGATCAAGTGCTTCCAAACATCAACACCGCGAATAATGCTTCCATAGAAGACATTCAACACCTATACACCAACAATTTTCTGATGAAGCAAGATTATGATGAAGAGGAAGAATGGCTGCAAGAAGCAATGGCTAGTTTATTGTACTAA 735 45.44 MAFISKVHNFTGDFQTPATAVPPMWYDDTAPSGLLDMYGVTMPQEYDVTTPLSRSSSWKTSFPERFGVSEMVVPTSPIGFGSVPVETDYQKVEQDDVFCSSVGYGTNSWSAYPTASTNWETESPKTRKEVEEPTLKIRRYSTEERKDKIMRYLKKRNQRNFNKTIKYECRKTLADKRVRVRGRFAKNNNDHHQPCEDQVLPNINTANNASIEDIQHLYTNNFLMKQDYDEEEEWLQEAMASLLY 244
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02323 244 ProSiteProfiles CCT domain profile. 145 187 IPR010402 GO:0005515(InterPro)
Fra11g02323 244 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 52 239 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Fra11g02323 244 Pfam CCT motif 145 187 IPR010402 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02323 K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:76978465 Fra8g00425 Fra-Chr8:3590865 dispersed
Fra Fra-Chr11:76978465 Fra16g01771 Fra-Chr16:50476621 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fra1g00727 WGDA 8 328 C2C2-CO-like Transcription Factor family AT2G47890 45.333 1.59e-93 281.0
Fra1g01661 . 10 355 C2C2-CO-like Transcription Factor family AT1G68190 35.372 2.64e-58 192.0
Fra2g00895 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.668 7.92e-139 398.0
Fra2g01367 ACH,WGDA 214 276 C2C2-CO-like Transcription Factor family AT2G24790 49.206 8.99e-13 65.9
Fra3g01231 . 306 393 C2C2-CO-like Transcription Factor family AT5G24930 39.773 6.75e-12 64.7
Fra4g00058 . 4 89 C2C2-CO-like Transcription Factor family AT5G54470 54.023 2.43e-26 99.0
Fra4g00146 . 1 117 C2C2-CO-like Transcription Factor family AT2G21320 81.197 1.12e-68 204.0
Fra5g00025 . 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 5.43e-10 57.4
Fra6g01137 ACH,WGDA 1 372 C2C2-CO-like Transcription Factor family AT3G07650 53.646 2.04e-132 381.0
Fra6g01191 . 1 198 C2C2-CO-like Transcription Factor family AT1G75540 50.505 3.40e-55 177.0
Fra7g01046 WGDA 1 204 C2C2-CO-like Transcription Factor family AT5G54470 38.942 2.76e-27 102.0
Fra7g01617 . 1 61 C2C2-CO-like Transcription Factor family AT1G78600 85.246 3.34e-32 114.0
Fra7g01631 . 6 205 C2C2-CO-like Transcription Factor family AT5G54470 40.777 6.70e-28 103.0
Fra7g01737 . 12 398 C2C2-CO-like Transcription Factor family AT2G33500 38.979 3.28e-78 246.0
Fra7g01794 . 5 401 C2C2-CO-like Transcription Factor family AT1G68520 43.349 1.73e-90 278.0
Fra7g02335 . 9 347 C2C2-CO-like Transcription Factor family AT3G02380 47.792 1.14e-113 334.0
Fra8g00425 ACH,WGDA 225 276 C2C2-CO-like Transcription Factor family AT2G24790 57.692 7.21e-13 66.2
Fra8g00708 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 48.196 9.32e-92 280.0
Fra8g00928 . 3 165 C2C2-CO-like Transcription Factor family AT4G27310 39.535 6.01e-32 114.0
Fra8g01895 ACH 268 401 C2C2-CO-like Transcription Factor family AT1G68520 39.437 1.72e-22 96.7
Fra9g00281 WGDA 3 199 C2C2-CO-like Transcription Factor family AT5G54470 41.315 3.39e-33 118.0
Fra9g01012 . 289 400 C2C2-CO-like Transcription Factor family AT1G68520 42.553 2.60e-20 89.4
Fra10g00114 . 1 204 C2C2-CO-like Transcription Factor family AT1G75540 50.0 6.84e-61 192.0
Fra10g00869 . 42 275 C2C2-CO-like Transcription Factor family AT2G24790 36.555 4.27e-27 103.0
Fra11g02323 . 242 319 C2C2-CO-like Transcription Factor family AT3G02380 34.615 1.23e-09 55.8
Fra11g02556 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 52.955 2.06e-133 385.0
Fra11g02678 . 1 204 C2C2-CO-like Transcription Factor family AT1G75540 53.333 3.41e-64 199.0
Fra11g02761 . 1 204 C2C2-CO-like Transcription Factor family AT1G75540 53.333 3.97e-64 199.0
Fra12g01060 . 11 347 C2C2-CO-like Transcription Factor family AT3G02380 51.163 1.11e-120 352.0
Fra12g01099 . 11 347 C2C2-CO-like Transcription Factor family AT3G02380 51.042 3.75e-121 353.0
Fra14g00104 . 270 331 C2C2-CO-like Transcription Factor family AT5G57660 43.243 6.28e-11 60.5
Fra14g00387 WGDA 1 373 C2C2-CO-like Transcription Factor family AT5G48250 56.316 1.44e-134 386.0
Fra14g00687 . 8 355 C2C2-CO-like Transcription Factor family AT5G57660 46.494 8.84e-100 298.0
Fra14g01616 . 1 373 C2C2-CO-like Transcription Factor family AT5G48250 50.952 1.29e-132 384.0
Fra15g00439 . 1 61 C2C2-CO-like Transcription Factor family AT1G78600 83.607 1.47e-31 110.0
Fra16g00481 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 45.748 5.29e-81 246.0
Fra16g00516 . 281 337 C2C2-CO-like Transcription Factor family AT5G57660 50.877 7.56e-13 65.1
Fra16g01771 ACH 176 276 C2C2-CO-like Transcription Factor family AT2G24790 37.624 4.79e-11 60.8
Fra17g00492 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 40.698 8.55e-12 62.0
Fra17g00834 WGDA 8 328 C2C2-CO-like Transcription Factor family AT2G47890 43.288 1.10e-91 276.0
Fra18g00439 . 334 393 C2C2-CO-like Transcription Factor family AT5G24930 45.0 2.85e-11 62.8
Fra10000121.1g00004 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 53.355 1.03e-97 288.0
Fra10000078.1g00003 . 245 386 C2C2-CO-like Transcription Factor family AT5G24930 32.45 1.19e-12 67.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fra CCT 2.2e-18 CL0281 TR Others