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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02344 ATGGTGGTTGTTAAGGGTTTAAGCACGTTCAAGAGTAGGGTTTCGGGAGAACGAGACACGAGGAAGAGTGGTGGATATAGAAGTTTGAAGGTGTATACAGAAGATGCTAAGGTGAAGGTTGATGCTCGGGATCATGTTGTGGCTGAAACTAAAAGGAAATCTATTCCAGTCAAAGCTGAATCTAGTCATATCCAGGCCAATTGTCAAAAGGAGGCCCTCAACAAGTTGGATAAGATTAATGGGAAAAACATCAACTCTGCTCAAACAAAAGTAGGAAGAAAAGTATTGGCGGATATCAGCAATTCCAAGGGTGTTTTTCAGAAGAATGCAACTGTTGATGGCTTTAAAGCTGGGAAAGGTAAAATGGAAAGGATGACATATTCACAACGGACCTCAGTGTCATCAGCCAAGGATCTGAAGGTCTTCAATGGTAATTCAAAGACAAAAGGTCAAGAAACTGTTGGTTATGTAACAAGGAAATCTACAAGGAGTTATTGCCCACCACAAAGGAAATCTTTACCAGTTCTAAAGAATGTTGACAAGAAGGAGATATCTGATATCAAGAAAGGAAATAAGGATAATAACTTGAACAAGGGAACACATGGCTTCTTTGTTAAACCTAAAGTTGGCACGACAATTGTACCACAAGTAAGCAATACTAGGGACTACCGTTGGAAGAATAGAGCTAGTGATGGATGCATAAAAATGGCATCAGATGGTCAACAAGCAGGGGACAAACAGAGACGACTGTCTAGGATATCAATGAAGCCAACCGTGAAAACGACAGTTGGCATTCCCAAAGCTCAAAGGCCATCAAGAACCACTTCTGTTTTTACCAAAGCTCAAAGGCCATCAAGAAGCACTTCTGTTTTTACCAAAGCTCAAATGCCTTCAAGAACCACTTCTGTTTTTACCAAATCGACATCTACAGCTTCAGTTTTATCCAAAAAAACTGAAGAAACATCAAAGTCTGAATCTATTTCTTGTAAGCAAATTGCACAAGGAGTCACATTAGATACAAGTACATCGAAACTCACTGCCAAGGGGAAATCTGGTCGCCGAAAATCCTACACATCTTTACTAATGGAAAGAACAAAGCTTTTAACGGATCGGGGTATTGTCACCAAGGAGGAAATTCTGCCCGACATTTATGATGATGGCAATGAACTTGAAGTTGCTGAATATGTTGATGAGATCTATCAGCACTATTGGGTCACCGAGGCACATAATCAACCACTGAAAAACTATATGGAGATCCAAACAGATATTACTCCTCAAATGCGGGGCATACTGATCAATTGGCTGATAGAAGTACATCTGAAGTTTGATTTAATGCAAGAGACGCTTTATCTGATGGTCACACTCTTAGACTTTTACTTGTCTGCTGTGACAATTAAGAAAACTGAAATGCAACTAGTTGGTCTCACATCACTGTTACTAGCATCAAAGTATGAGGATTTTTGGCATCCACAGGTTATGGAATTAATTAGTATCTCCGCAGAGACATACACAAAAGAGCAAATGCTTGGAATGGAGACAACAATTTTAAAGAAGATAGACTTCCGTCTTAATTTGCCTACACCTTATGTTTTCATGCTGAGATTTCTTAGAGCTGCACAGGGAGGCAAAAAGTTTGAAAACCTAGCATACTTCCTCATTGAGCTGTGCTTGGTGGAATATGATGCCTTACACTACAAACCATCATTACTATGTGCATCAGCTATATATGTTGCTAGATGTACCCTGCATTTGGCCCCAGCATGGACCCCACTTCTATGCAAACATTCTAAGTACCAAGAATTTCAGATCAGGGACTGTGCTGAGATGATCTTGGGATTTCACCAAGCTGCAAGGAAATCAGTTTTAAAAGTGACATATGACAAATACACGCGCGATAAAAACTGCAAAGTCGCACTGATCAAACCTCTCGACAGGCTTCCACCTCCGTAG 1950 40.26 MVVVKGLSTFKSRVSGERDTRKSGGYRSLKVYTEDAKVKVDARDHVVAETKRKSIPVKAESSHIQANCQKEALNKLDKINGKNINSAQTKVGRKVLADISNSKGVFQKNATVDGFKAGKGKMERMTYSQRTSVSSAKDLKVFNGNSKTKGQETVGYVTRKSTRSYCPPQRKSLPVLKNVDKKEISDIKKGNKDNNLNKGTHGFFVKPKVGTTIVPQVSNTRDYRWKNRASDGCIKMASDGQQAGDKQRRLSRISMKPTVKTTVGIPKAQRPSRTTSVFTKAQRPSRSTSVFTKAQMPSRTTSVFTKSTSTASVLSKKTEETSKSESISCKQIAQGVTLDTSTSKLTAKGKSGRRKSYTSLLMERTKLLTDRGIVTKEEILPDIYDDGNELEVAEYVDEIYQHYWVTEAHNQPLKNYMEIQTDITPQMRGILINWLIEVHLKFDLMQETLYLMVTLLDFYLSAVTIKKTEMQLVGLTSLLLASKYEDFWHPQVMELISISAETYTKEQMLGMETTILKKIDFRLNLPTPYVFMLRFLRAAQGGKKFENLAYFLIELCLVEYDALHYKPSLLCASAIYVARCTLHLAPAWTPLLCKHSKYQEFQIRDCAEMILGFHQAARKSVLKVTYDKYTRDKNCKVALIKPLDRLPPP 649
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02344 649 SUPERFAMILY Cyclin-like 388 524 IPR036915 -
Fra11g02344 649 Pfam Cyclin, C-terminal domain 526 642 IPR004367 -
Fra11g02344 649 FunFam putative cyclin-B3-1 isoform X3 522 647 - -
Fra11g02344 649 Gene3D - 518 647 - -
Fra11g02344 649 MobiDBLite consensus disorder prediction 262 311 - -
Fra11g02344 649 MobiDBLite consensus disorder prediction 265 311 - -
Fra11g02344 649 FunFam Cyclin N-terminal domain containing 2 413 521 - -
Fra11g02344 649 Pfam Cyclin, N-terminal domain 398 524 IPR006671 -
Fra11g02344 649 CDD CYCLIN-CCNB1-like-rpt1 392 521 - -
Fra11g02344 649 SUPERFAMILY Cyclin-like 526 645 IPR036915 -
Fra11g02344 649 SMART Cyclin-C-2 526 643 IPR004367 -
Fra11g02344 649 Gene3D - 413 517 - -
Fra11g02344 649 PANTHER CYCLINS 379 629 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Fra11g02344 649 SMART cyclin-7 433 517 IPR013763 -
Fra11g02344 649 SMART cyclin-7 530 612 IPR013763 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02344 K21777 G2/mitotic-specific cyclin-B, other
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:77203844 Fra12g02351 Fra-Chr12:78620373 dispersed
Fra Fra-Chr11:77203844 Fra2g01527 Fra-Chr2:67479691 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fra1g00609 . 18 364 Core Cell Cycle gene family AT5G10270 46.418 3.34e-104 324.0
Fra1g00779 . 6 391 Core Cell Cycle gene family AT1G18040 77.202 0.0 598.0
Fra1g00912 . 18 364 Core Cell Cycle gene family AT5G10270 48.286 9.18e-112 341.0
Fra1g00965 . 19 304 Core Cell Cycle gene family AT1G76540 25.816 9.20e-27 107.0
Fra1g01473 . 17 371 Core Cell Cycle gene family AT5G64960 44.78 3.92e-94 301.0
Fra2g00302 . 1 55 Core Cell Cycle gene family AT3G48750 36.364 3.50e-07 43.5
Fra2g01138 . 18 363 Core Cell Cycle gene family AT5G10270 52.45 6.22e-121 364.0
Fra2g01211 . 10 296 Core Cell Cycle gene family AT1G66750 37.671 7.37e-66 213.0
Fra2g01250 . 75 244 Core Cell Cycle gene family AT5G27620 24.084 3.31e-06 47.4
Fra2g01437 . 12 241 Core Cell Cycle gene family AT4G28980 26.16 4.59e-11 64.7
Fra2g01527 . 1 384 Core Cell Cycle gene family AT2G26760 52.174 8.14e-143 410.0
Fra3g00343 WGDA 70 338 Core Cell Cycle gene family AT2G22490 51.103 3.24e-78 242.0
Fra3g01187 . 1 220 Core Cell Cycle gene family AT5G48820 39.669 8.59e-35 122.0
Fra3g01356 WGDA 1 434 Core Cell Cycle gene family AT5G25380 51.374 6.52e-151 435.0
Fra4g00796 . 1 294 Core Cell Cycle gene family AT3G48750 86.735 0.0 538.0
Fra4g01232 . 12 339 Core Cell Cycle gene family AT1G70210 60.18 2.75e-132 378.0
Fra5g00717 WGDA 20 322 Core Cell Cycle gene family AT4G37630 33.651 1.61e-49 166.0
Fra5g01302 WGDA 1 430 Core Cell Cycle gene family AT1G76310 58.257 2.64e-168 477.0
Fra6g00840 . 20 312 Core Cell Cycle gene family AT1G76540 34.228 3.95e-55 183.0
Fra6g01004 . 6 354 Core Cell Cycle gene family AT5G43080 50.139 6.58e-123 357.0
Fra6g01055 ACH,WGDA 90 195 Core Cell Cycle gene family AT1G49620 42.105 1.08e-20 83.2
Fra7g00738 . 29 230 Core Cell Cycle gene family AT5G10440 51.961 2.61e-65 206.0
Fra7g00762 . 29 230 Core Cell Cycle gene family AT5G10440 51.961 3.13e-65 206.0
Fra7g01344 ACH,WGDA 63 347 Core Cell Cycle gene family AT5G67260 48.148 2.19e-88 268.0
Fra7g01416 ACH 20 429 Core Cell Cycle gene family AT1G20610 54.087 2.75e-152 436.0
Fra7g01513 . 1 479 Core Cell Cycle gene family AT5G10270 77.778 0.0 736.0
Fra7g02276 . 18 357 Core Cell Cycle gene family AT5G10270 45.588 1.17e-99 310.0
Fra7g02390 . 87 195 Core Cell Cycle gene family AT1G49620 38.053 1.92e-17 75.5
Fra7g02434 ACH,WGDA 63 367 Core Cell Cycle gene family AT5G67260 47.319 5.68e-93 281.0
Fra7g02722 ACH 1 363 Core Cell Cycle gene family AT1G47230 55.191 7.70e-145 413.0
Fra7g02729 WGDA 18 286 Core Cell Cycle gene family AT4G34160 46.284 5.16e-81 250.0
Fra7g03174 . 16 310 Core Cell Cycle gene family AT1G20930 46.711 1.16e-84 264.0
Fra7g03225 . 18 357 Core Cell Cycle gene family AT5G10270 51.906 9.34e-116 351.0
Fra7g03344 . 19 459 Core Cell Cycle gene family AT1G80370 52.212 5.62e-144 417.0
Fra8g00646 . 1 294 Core Cell Cycle gene family AT3G48750 36.364 1.06e-66 213.0
Fra8g00666 . 1 294 Core Cell Cycle gene family AT3G48750 36.364 1.27e-67 214.0
Fra8g00730 . 18 363 Core Cell Cycle gene family AT5G10270 52.161 3.30e-120 362.0
Fra8g01528 . 20 312 Core Cell Cycle gene family AT1G76540 34.915 3.84e-56 186.0
Fra8g01535 . 18 379 Core Cell Cycle gene family AT5G10270 49.457 3.29e-116 357.0
Fra8g02326 . 225 478 Core Cell Cycle gene family AT4G28980 57.812 7.18e-102 303.0
Fra8g02454 . 6 478 Core Cell Cycle gene family AT4G28980 56.695 0.0 531.0
Fra9g00333 . 18 447 Core Cell Cycle gene family AT5G10270 46.868 1.52e-123 373.0
Fra9g00569 . 1 434 Core Cell Cycle gene family AT5G25380 51.522 1.78e-144 418.0
Fra9g00597 . 18 363 Core Cell Cycle gene family AT5G10270 51.297 2.08e-119 360.0
Fra9g01230 ACH,WGDA 3 358 Core Cell Cycle gene family AT5G67260 42.593 7.33e-89 270.0
Fra9g01558 . 12 428 Core Cell Cycle gene family AT2G17620 58.531 5.66e-156 446.0
Fra9g02209 . 18 470 Core Cell Cycle gene family AT5G63610 75.693 0.0 709.0
Fra10g00042 . 14 285 Core Cell Cycle gene family AT4G34160 50.685 1.55e-94 285.0
Fra10g00061 . 89 195 Core Cell Cycle gene family AT1G49620 42.609 5.58e-24 92.8
Fra10g00878 . 1 317 Core Cell Cycle gene family AT5G27620 60.502 8.39e-138 392.0
Fra10g01164 ACH,WGDA 1 222 Core Cell Cycle gene family AT5G48820 46.694 9.42e-52 165.0
Fra10g01369 . 1 982 Core Cell Cycle gene family AT3G12280 67.6 0.0 1348.0
Fra10g01487 . 20 312 Core Cell Cycle gene family AT1G76540 35.254 1.22e-58 193.0
Fra10g01852 . 89 497 Core Cell Cycle gene family AT1G02970 60.097 2.63e-179 508.0
Fra11g00515 . 10 290 Core Cell Cycle gene family AT3G48750 36.644 3.35e-56 184.0
Fra11g00804 ACH,WGDA 1 222 Core Cell Cycle gene family AT5G48820 43.443 1.81e-48 157.0
Fra11g00830 ACH 55 273 Core Cell Cycle gene family AT5G27620 24.454 8.08e-14 68.2
Fra11g01657 . 1 353 Core Cell Cycle gene family AT5G43080 59.563 9.05e-154 435.0
Fra11g02344 . 22 647 Core Cell Cycle gene family AT1G16330 43.598 6.30e-155 459.0
Fra11g02462 . 18 379 Core Cell Cycle gene family AT5G10270 52.186 4.08e-121 369.0
Fra11g02711 . 10 280 Core Cell Cycle gene family AT4G34160 50.175 4.72e-94 284.0
Fra11g02732 ACH 89 195 Core Cell Cycle gene family AT1G49620 41.27 1.57e-23 91.7
Fra12g00067 WGDA 7 322 Core Cell Cycle gene family AT4G37630 33.229 6.00e-48 161.0
Fra12g00073 . 12 304 Core Cell Cycle gene family AT1G76540 31.31 1.24e-41 147.0
Fra12g00081 . 12 304 Core Cell Cycle gene family AT1G76540 29.773 2.37e-42 149.0
Fra12g00112 . 176 222 Core Cell Cycle gene family AT5G48820 57.447 1.11e-14 68.6
Fra12g00756 . 1 220 Core Cell Cycle gene family AT5G48820 42.5 7.84e-45 147.0
Fra12g01080 . 18 349 Core Cell Cycle gene family AT5G10270 47.289 3.41e-99 309.0
Fra12g01135 . 176 222 Core Cell Cycle gene family AT5G48820 57.447 1.17e-14 68.6
Fra12g01169 . 12 304 Core Cell Cycle gene family AT1G76540 29.773 7.38e-43 151.0
Fra12g01176 . 12 304 Core Cell Cycle gene family AT1G76540 31.31 1.24e-41 147.0
Fra12g01181 WGDA 7 322 Core Cell Cycle gene family AT4G37630 33.542 5.20e-50 167.0
Fra12g01335 ACH 1 429 Core Cell Cycle gene family AT1G20610 52.656 5.10e-153 439.0
Fra12g01455 . 96 187 Core Cell Cycle gene family AT1G76310 45.652 1.09e-13 62.4
Fra12g02351 WGDA 1 430 Core Cell Cycle gene family AT1G76310 60.731 1.19e-171 486.0
Fra13g00393 . 30 143 Core Cell Cycle gene family AT3G48750 79.825 6.97e-62 189.0
Fra13g00556 . 190 399 Core Cell Cycle gene family AT5G06150 29.596 3.32e-22 97.8
Fra13g00979 WGDA 14 304 Core Cell Cycle gene family AT1G76540 26.1 2.41e-28 112.0
Fra13g01088 WGDA 1 82 Core Cell Cycle gene family AT2G27960 96.341 3.11e-57 169.0
Fra13g01293 . 10 290 Core Cell Cycle gene family AT3G48750 35.739 8.92e-57 186.0
Fra13g01666 . 1 434 Core Cell Cycle gene family AT5G06150 52.609 1.21e-150 434.0
Fra14g00239 . 52 282 Core Cell Cycle gene family AT1G70210 44.017 7.90e-54 176.0
Fra14g00326 WGDA 90 195 Core Cell Cycle gene family AT1G49620 42.478 1.62e-20 83.2
Fra14g01038 . 17 371 Core Cell Cycle gene family AT5G64960 44.505 1.72e-94 301.0
Fra14g01255 . 8 302 Core Cell Cycle gene family AT3G54180 25.519 1.14e-12 67.4
Fra14g01412 . 11 309 Core Cell Cycle gene family AT1G20930 87.291 0.0 558.0
Fra14g01413 . 11 315 Core Cell Cycle gene family AT1G20930 84.59 0.0 548.0
Fra15g00235 . 18 401 Core Cell Cycle gene family AT5G10270 46.731 3.22e-117 355.0
Fra15g00276 . 21 333 Core Cell Cycle gene family AT5G10270 47.188 1.99e-86 276.0
Fra15g00292 . 19 304 Core Cell Cycle gene family AT1G76540 26.347 2.49e-27 109.0
Fra15g00496 WGDA 61 275 Core Cell Cycle gene family AT4G34160 46.544 1.32e-63 204.0
Fra15g00676 ACH,WGDA 1 366 Core Cell Cycle gene family AT5G67260 44.416 4.84e-99 296.0
Fra15g01004 . 1 505 Core Cell Cycle gene family AT5G10270 76.82 0.0 772.0
Fra16g00280 . 20 460 Core Cell Cycle gene family AT1G44110 59.705 0.0 550.0
Fra16g00357 . 161 243 Core Cell Cycle gene family AT1G70210 38.554 2.53e-12 61.6
Fra16g00358 . 7 104 Core Cell Cycle gene family AT4G37630 31.731 2.24e-07 45.8
Fra16g00457 . 75 266 Core Cell Cycle gene family AT5G27620 23.348 5.84e-08 52.4
Fra16g00736 . 18 366 Core Cell Cycle gene family AT5G10270 52.286 2.97e-117 355.0
Fra16g00888 WGDA 36 338 Core Cell Cycle gene family AT2G22490 46.58 1.00e-76 238.0
Fra16g01611 . 4 289 Core Cell Cycle gene family AT5G02110 29.352 2.05e-36 133.0
Fra16g01925 . 1 294 Core Cell Cycle gene family AT3G48750 37.5 6.97e-68 216.0
Fra16g02015 ACH,WGDA 1 431 Core Cell Cycle gene family AT5G25380 49.053 2.13e-143 416.0
Fra16g02027 . 3 301 Core Cell Cycle gene family AT3G54180 28.53 5.75e-30 115.0
Fra17g00193 . 44 302 Core Cell Cycle gene family AT5G65420 46.84 2.36e-71 222.0
Fra17g00910 . 6 391 Core Cell Cycle gene family AT1G18040 76.726 0.0 599.0
Fra17g01323 ACH 3 353 Core Cell Cycle gene family AT5G43080 57.412 2.96e-150 427.0
Fra17g01508 . 1 288 Core Cell Cycle gene family AT3G48750 37.838 1.57e-62 200.0
Fra17g01573 . 18 357 Core Cell Cycle gene family AT5G10270 48.105 1.54e-103 322.0
Fra17g01584 . 18 357 Core Cell Cycle gene family AT5G10270 48.105 3.92e-103 322.0
Fra18g00628 WGDA 1 82 Core Cell Cycle gene family AT2G27960 96.341 3.49e-57 169.0
Fra18g00772 WGDA 14 304 Core Cell Cycle gene family AT1G76540 26.316 5.46e-28 111.0
Fra18g01012 . 1 436 Core Cell Cycle gene family AT5G06150 51.868 8.69e-147 424.0
Fra18g01072 ACH 1 221 Core Cell Cycle gene family AT5G48820 42.857 2.62e-41 138.0
Fra18g01090 ACH 99 259 Core Cell Cycle gene family AT5G27620 28.235 3.76e-10 57.4
Fra18g01302 . 1 287 Core Cell Cycle gene family AT3G48750 38.356 7.07e-62 198.0
Fra18g01533 . 1 287 Core Cell Cycle gene family AT3G48750 38.305 5.48e-62 199.0
Fra18g01719 . 2 309 Core Cell Cycle gene family AT3G54180 81.494 0.0 523.0
Fra10000094.1g00001 . 1 106 Core Cell Cycle gene family AT3G48750 83.019 2.10e-58 181.0
Fra10000185.1g00001 . 18 367 Core Cell Cycle gene family AT5G10270 50.281 8.25e-115 352.0
Fra10000250.1g00028 . 20 425 Core Cell Cycle gene family AT5G10270 41.119 6.47e-97 303.0
Fra10000279.1g00014 . 1 353 Core Cell Cycle gene family AT5G43080 59.836 1.35e-154 437.0
Fra10000365.1g00040 . 1 436 Core Cell Cycle gene family AT5G06150 51.868 1.51e-147 426.0