AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02354 ATGAACATTGAAATCTACGGTAGGCATGCTCTTCTCTTCGACGATGATACATCTGCAGCCTTCGTAAACTCCGACGACGCACTTGTTGAATGGAATTCGCTCTTAATCGATCGTTACGACGTCCGGCATCTCCTCTCCAGTCCTCCGCCGTCTCGGCGGCGGCGGAATCCACAAACGTCGCACTCGTCCTCCGCCGATGCGGACCTCGATTATGAACGGTATCTGGATCTCCCCCCACCGTCGGAGGAAGAAGAAGAAGATGCAAAACCAGATGCCGTAGGTGGATTTAATGCCGTTCCTTTTTCTTATGGAAATGATGAGGATGCTAATGATCAAAAGACTGCCGAGGCTGAACAAGAAGTCCCTAAATTTCATCCCCCTTTCCCTGTACCTGACAGCCTTGTTCAAAACTTGCCTCCTACGGAGAAAGTACATCAGATTATTGCAAGGACTGCTCTTTTTGTCAGTAAAAATGGTGGTCAATCAGAGATCATTTTGAGGGTGAAGCAAGGAGACAACCCAACATTTGGGTTCTTAATGCCAGATCATCATCTCCATCCGTACTTCAGGTTTCTGGTTGACAACCAGGATCTCTTACAATCAAAAGACAACGGGCAGCCTGAAAATGAGGAGAAAATATCAAATGCTGGAGCATTGTCTTTACTTGGTTCTGTATATGGTACTGGTGAGGATGATGATGGTGGAACTGAGGATCCATCATCATCTAAAGAATGTGTATCTGTGAATAATGTTAGTGTAGAAGCTACTGCTCCTCTTGTAGAAGGGAAAACCATGTTGCCATCTGGCAAAGACGAGCCTATTCTAAAAAGAAATTCTCTGTCAAATGCATTGAAAGCTGGAAGAACTAGTAGTCTTAAGAAAGGCGAGGTTTCAGCTTCACTAGCGTCTGTTCCAGATAAGTCGCGAGCTTCCTCTCTACCTCCAATTCCCAAAACTGAGCTCATGCTTGTGGACCCACCATCTGACATGAAACGGTTGGTTGAAAAGATAGTGGAATTTATCCTCAAGAATGGGAGGCAGTTTGAGGCTGTACTTATGGAACAAGATCGTGGTCATGGAAGGTTCCCGTTTTTAATCCCATCTAATATATTCCATCCATACTATCTGAAAGTTCTCCAGAAAGCCCAAGAGTCGAAATTAACTGTCAAAAGTCTTTATGACGAGAAAGAAGATTTCCGAGGACATATCTCAAACAAGAAAAAGTCTACCTCGAGGGAGAATGAGAATAATATGATGGAATCTGATGATATACCACTTGATTCTGAAAGAAAAGAGAAGTTTAAGATGGTAATTAACAAGTCTAAAAAAGAAGGATCAGATTTGCCAGCTAAATCCACACAATCACCACCTAGAGTCCAGGTGGATGCTGATCAAGCAGCAGCCATTCTTCAAGCTGCTACTAGAGGCATTAAACCTTCAAATTTGGGAATTTTGTATGGACAACCATCTAATGAAGCCGGTTCGTCTGAATCACACTTGACACACGAGCAGAAATTAAAAGCTGAGAGGCTGAAACGGGCCAAGATGTTTGTGGCTCAGTTGAAAAGCGGGGCAGTTCCATCAAAAGCTGAGCCCTCACGTTGCTCATCAGCTGAGCCTCAAGCTGACAACCGCCCTGCAGCCAAAGAAACCAAGAAGAGCACATCTCCTTCAGATTTTGATACTTCAGATAAAAAACTAAAACCAGAAAAAGAACATTTGAATGAGGAGAAACGAGCAATGAGAAATTATCGTGCTCGTTCTGTTGGAGAAAAAAAAGATGATGATGACAATGATGATGATGACCACGACGATGATGATGAGAGAGAAAGAAAAAGGTCACATAGACACCATAAGAAGAAACATCGATCTCATAATCAGTCAGTTGAAGATGAGAGAGAAGAAAAATACGTAGATGAGAGAGATCATAAACATGCAAAAAGAAGACACCGATCTCATCATTCTTCCCATAAACGTGATGACATGGACAAAACCATAGAAGAAAAGGATCATAAGTATTCAAAGAAGAAGAAACATAGATCTTCTAGTTCTTATGAAGATGATGAACAAGACAGTGAACATGAATATTCTAGAAAGAAACATCAATCTCATCATTCATCACACGATGAAGCTGACAGTGATGATAATTATTCTAGGAAAAAACGAAAACATAGATCTCACAAATCTTCTCATAGGCACAAGCATAGGAAAAGTCACTCTTCTAGACATAAACAAAAGGTTGATGTAACTTCAGAAGAGGAGTCGATGGACCAAAATAAGGCTGATAAGAATGTCAAGGGACCAAACTCGGAAAGAGAACTTGAAGACGGGGAGATAGCGGGTCCAGCAAAAGCGGGAGCATTGATTGATGGTGGGGCTAGTAGAGAACCTTCGGTTGATGTATCAAGTTCGGTTCAAGATCCGAGGTCGCTGACTCAGCCATCCGGAACAACTGAGGTTTCTGATGATCTTCGGGCCAAAATCAGAGCTATGTTGATGTCGACATTGTAA 2511 42.37 MNIEIYGRHALLFDDDTSAAFVNSDDALVEWNSLLIDRYDVRHLLSSPPPSRRRRNPQTSHSSSADADLDYERYLDLPPPSEEEEEDAKPDAVGGFNAVPFSYGNDEDANDQKTAEAEQEVPKFHPPFPVPDSLVQNLPPTEKVHQIIARTALFVSKNGGQSEIILRVKQGDNPTFGFLMPDHHLHPYFRFLVDNQDLLQSKDNGQPENEEKISNAGALSLLGSVYGTGEDDDGGTEDPSSSKECVSVNNVSVEATAPLVEGKTMLPSGKDEPILKRNSLSNALKAGRTSSLKKGEVSASLASVPDKSRASSLPPIPKTELMLVDPPSDMKRLVEKIVEFILKNGRQFEAVLMEQDRGHGRFPFLIPSNIFHPYYLKVLQKAQESKLTVKSLYDEKEDFRGHISNKKKSTSRENENNMMESDDIPLDSERKEKFKMVINKSKKEGSDLPAKSTQSPPRVQVDADQAAAILQAATRGIKPSNLGILYGQPSNEAGSSESHLTHEQKLKAERLKRAKMFVAQLKSGAVPSKAEPSRCSSAEPQADNRPAAKETKKSTSPSDFDTSDKKLKPEKEHLNEEKRAMRNYRARSVGEKKDDDDNDDDDHDDDDERERKRSHRHHKKKHRSHNQSVEDEREEKYVDERDHKHAKRRHRSHHSSHKRDDMDKTIEEKDHKYSKKKKHRSSSSYEDDEQDSEHEYSRKKHQSHHSSHDEADSDDNYSRKKRKHRSHKSSHRHKHRKSHSSRHKQKVDVTSEEESMDQNKADKNVKGPNSERELEDGEIAGPAKAGALIDGGASREPSVDVSSSVQDPRSLTQPSGTTEVSDDLRAKIRAMLMSTL 836
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02354 836 SMART surpneu2 331 384 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Fra11g02354 836 SMART surpneu2 145 198 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Fra11g02354 836 MobiDBLite consensus disorder prediction 523 823 - -
Fra11g02354 836 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 628 IPR040397 GO:0000395(PANTHER)
Fra11g02354 836 MobiDBLite consensus disorder prediction 51 65 - -
Fra11g02354 836 MobiDBLite consensus disorder prediction 680 719 - -
Fra11g02354 836 Pfam Surp module 331 380 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Fra11g02354 836 Pfam Surp module 146 194 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Fra11g02354 836 MobiDBLite consensus disorder prediction 797 820 - -
Fra11g02354 836 Gene3D Surp module 140 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Fra11g02354 836 MobiDBLite consensus disorder prediction 744 779 - -
Fra11g02354 836 Pfam Alternative splicing regulator 3 87 IPR019147 -
Fra11g02354 836 SMART DRY-EERY-2 1 107 IPR019147 -
Fra11g02354 836 MobiDBLite consensus disorder prediction 545 594 - -
Fra11g02354 836 MobiDBLite consensus disorder prediction 45 125 - -
Fra11g02354 836 SUPERFAMILY Surp module (SWAP domain) 123 194 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Fra11g02354 836 MobiDBLite consensus disorder prediction 403 424 - -
Fra11g02354 836 MobiDBLite consensus disorder prediction 625 642 - -
Fra11g02354 836 MobiDBLite consensus disorder prediction 720 743 - -
Fra11g02354 836 ProSiteProfiles SURP motif repeat profile. 147 189 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Fra11g02354 836 MobiDBLite consensus disorder prediction 224 246 - -
Fra11g02354 836 SUPERFAMILY Surp module (SWAP domain) 307 380 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Fra11g02354 836 ProSiteProfiles SURP motif repeat profile. 333 375 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Fra11g02354 836 Gene3D Surp module 319 388 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Fra11g02354 836 MobiDBLite consensus disorder prediction 656 672 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02354 - -