AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02452 ATGGCAGCTCGACTGTTGGCTCATGAGGTTTCCGATCTGTGCCTCGGTAAGCCTCCGGTGAACTTCCTCCCCATCTCCGCCACCGTCCGCCGCGCCATCGCCGCCCTCAAATCCTCCGGCGACACCCACGTCAGCATCTGGTCCTGCAGCGACCACCACCACTCCGCCACCGACGACTGCCGTTGCGTCGGTAAAATCTCCATGGTTGACATCATCTGCTACCTCTGTAAAGATGATAATATATCATCTCCGGCCACCGCACTTAAGGCCCCTGTTTCCGTTTTGCTGTCACGTGTTCCCGGAGTTGTTCAGCACGTGGATCCTTCTTATAGTTTGCTTGAAGCCATTGATCTAATCATCAATGGAGCTCAAAACCTCGTGGTGCCAATAAAGAACACAACCTCAAAACGAAAACAACTCCGGCAGCCACCGTCGCTAGCTCCGACGACCCACGGCGGCGGCCGTGAGTTCTGCTGGTTAACACAAGAAGACATAATCAGATTCCTTCTCAGTTCAATCGGATTATTCTCTCCGATCGCCGCTTATTCAATCAAAACCCTAGGAATCATCACGACGGAGATCCTCACCGTCAACTACCACTCACCGGCGTCAGTCGCCGCCATTTCCGCCGCTCATTCCAACCAAACCTCCGTCGCCGTCGTCGACGACGACGGCGTACTGATCGGAGAAATCTCTCCGTCCACTCTCGCCTACTGCGACGAGACGGTCTCGGCGGCGATCACGACGCTGTCCGCCGGTGACCTGATGGCGTACATAGACTGCGGTGGTCCGCCGGAGGATATCGCCGCGGTGGTGGCGGTGAGGTTGAAGGAGATGAATCTCACCGGAATGCTCGATGAGTTTCTAACCTATTCCACCGGAGTTCCGTACTGTAACACCGGTTGTTCACCGGAGACCACCGGATCAGGGCGGAGGTGCCACCGCTCCGGCAGCGTTATGCGGCGGGCGGAGGCTATCGTCTGCCACCCGTGGAGCTCGTTGGTGGCGGTGATGATTCAGGCGATTGCTCATCGTGTGAGTTATGTGTGGGTGGTTGAAGACGATTGTAGTGTCGTCGGAATCGTGAAGTTTTCCGGTGTGTTGAAGGTTTTTCAGGAGCATTTGGAGAAGATGATAAACTAG 1143 55.73 MAARLLAHEVSDLCLGKPPVNFLPISATVRRAIAALKSSGDTHVSIWSCSDHHHSATDDCRCVGKISMVDIICYLCKDDNISSPATALKAPVSVLLSRVPGVVQHVDPSYSLLEAIDLIINGAQNLVVPIKNTTSKRKQLRQPPSLAPTTHGGGREFCWLTQEDIIRFLLSSIGLFSPIAAYSIKTLGIITTEILTVNYHSPASVAAISAAHSNQTSVAVVDDDGVLIGEISPSTLAYCDETVSAAITTLSAGDLMAYIDCGGPPEDIAAVVAVRLKEMNLTGMLDEFLTYSTGVPYCNTGCSPETTGSGRRCHRSGSVMRRAEAIVCHPWSSLVAVMIQAIAHRVSYVWVVEDDCSVVGIVKFSGVLKVFQEHLEKMIN 380
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02452 380 Gene3D - 190 370 IPR046342 -
Fra11g02452 380 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 20 374 IPR050511 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Fra11g02452 380 SUPERFAMILY CBS-domain pair 182 377 IPR046342 -
Fra11g02452 380 SUPERFAMILY CBS-domain pair 5 171 IPR046342 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02452 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:1018407 Fra11g02452 Fra-Chr11:78231456 dispersed
Fra Fra-Chr11:78231456 Fra16g00794 Fra-Chr16:39615065 dispersed
Fra Fra-Chr11:78224753 Fra11g02452 Fra-Chr11:78231456 tandem