AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02475 ATGGCTACCAATTCAGTTGAGGTTGATCATGTCGAAGAATCAAAAGTTCATGTCTTTTCATCGTCGACAGAGTTGCTTGAGAAGTTGCATCAGAAGTGGAAATCAGTTGAGAAACTGCCATACCCTGCAATGTATTCTAGTGTTTATGGTGGGATTATTCTTGATCCTGCTATGATGGTCATCCCGATCGATGATCATATGGCGCATCGAGGCCACGGTGTGTTCGACACAGCCATCATCATTGATGGACACCTGTATGAACTTGATGGTCATCTTGATCGAATCCTCGTATCAGCATCGAAAGCCAAGCTCTCGCCTCCATTCCCACGATCAACTCTTCGATCGATCCTTATCCAGCTGGCAGCCGTATCAAAATGCAAGAAAGGAACTTTAAGATATTGGTTAAGTGCAGGACCAGGGGATTTCTTACTTACTCCCTCAGCGTCCACAACATCTGCGTTCTATGCAATCGTTATTGATGAAGAATTCTCGCAGTGTAAAGAAGGCGTAAAGGTGATAACTTCCACAATTCCCATGAAAGTACCTATGTTTGCTACAAGCAAGAATGTGAATTACCTCCCAAATGTACTGTCAAAGCTTGAAGCAGAAGAGAAAGGTGCATTTGCATCAATTTGGGTGGATGATGAAGGGTATGTCGCTGAGGGTCCGAATGTGAATGTTGGTTTTGTGACCCGCGAAAAAGAGCTTATTTTGCCATATTTTGACAAGATTTTAAGCGGGTGTACCGCGAAACGGCTTCTTGAATTAGCTCCAAAGCTGGTTGAAAATGGGAGTTTGAAGAGTGTGAAAATTGGGAATATAACAGTTGATGAAGCCAAACAAGCTGCTGAAATGATGTACATTGGAAGCACACTGCCTTTACTGCCAATTATTGAGTGGGATGAGAAGCCGATTGGCGATGGGAAAGTTGGGGAGTTGACAATGGCGCTATCGGATCTGATTTGGGAGGATATGGTGGCTGGTCCGGAGACACACAGGATAAAGGTTCCTTACGCGTAA 1020 44.12 MATNSVEVDHVEESKVHVFSSSTELLEKLHQKWKSVEKLPYPAMYSSVYGGIILDPAMMVIPIDDHMAHRGHGVFDTAIIIDGHLYELDGHLDRILVSASKAKLSPPFPRSTLRSILIQLAAVSKCKKGTLRYWLSAGPGDFLLTPSASTTSAFYAIVIDEEFSQCKEGVKVITSTIPMKVPMFATSKNVNYLPNVLSKLEAEEKGAFASIWVDDEGYVAEGPNVNVGFVTREKELILPYFDKILSGCTAKRLLELAPKLVENGSLKSVKIGNITVDEAKQAAEMMYIGSTLPLLPIIEWDEKPIGDGKVGELTMALSDLIWEDMVAGPETHRIKVPYA 339
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02475 339 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 49 326 IPR036038 GO:0003824(InterPro)
Fra11g02475 339 FunFam D-alanine aminotransferase 161 328 - -
Fra11g02475 339 FunFam D-amino-acid transaminase, chloroplastic 21 159 - -
Fra11g02475 339 Gene3D - 12 159 IPR043131 -
Fra11g02475 339 PANTHER AMINO-ACID AMINOTRANSFERASE 33 330 IPR050571 GO:0019752(PANTHER)
Fra11g02475 339 Gene3D - 161 330 IPR043132 -
Fra11g02475 339 Pfam Amino-transferase class IV 73 300 IPR001544 GO:0003824(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02475 K18482 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:78451050 Fra16g00223 Fra-Chr16:19347215 dispersed