AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02483 ATGGATTCAGGGGTGTTAGATGCGGATAGAATAAGCAAAGGGAAGAGTAAGTGGGGTGAGGGTAGTAAAGTGTACACACGAAGGATTAAAACCACCACCAACAACACCACCACCACCACCACCACCACCGCCACCGCTACCACCGCCGTCGCCGCGGCGGCGTCCGCCTCTTCTCCGACCCCTACAGCCACCGTCACCGCCGCTTCTCCAACCACCACCCCAAATAATGGTCAAACCCTAGCTACAGAGCTCCCAGATTATGAAATTCGACGTACTTTATCGCCTGTGGTTGAGGCGTTTGATGATCATTCCATTCGGGAGGCCTCCGGAAACGGGGTGGTGAAACCGGTTGTTGTCGTGGTGGATGGTCGGGTGAGGATTAATGTACGAGCTGCGAAGGCGGCTAAGAATGAAGTTATTGAGCTTATGGAGACGATGAAAGCTGAGCTGGAAAGAGTCCGACGTGTAGCTCAGAGGCTTGAGGATAAAGAAGCTGAGCTAACTGCGTTTTCGACCGTTGATGGTGTTGCTGGCGACGGTGATGGTGAGGCTTACGATCATTTGCAGTATTCTGGTAATGATGCAGTTGATAGGAGGGCTTTACTTAGAGTTAATTCGGAAATGGGTACTGATTATATGGAAGATCGTAGAGCGTTGATGAGAATTAATTCTGAAGTGGGTTCAGTTACGAATAGTGATATAAGGCCTTTTAGGCAGATAAGTGTATCGGTTGTGAATAATAACCATGGAGTTGGTGAGTTTGTGGAGAAAGAGAAGAGGACGCCGAAGGCTAATCAGTATTATCGGAATTCTGATTTTCTTCTTGGGAAAGATAGATTACCCCCTGAAACGAACAAGAGGCGTAAATCTAACAGTGGAAGAAAACATAGCAAGGAGTCGGATTATGTAAGGAATCAGATGTTTAAGAACTGTAACAATTTGCTGCAGAGGTTAATGAAGCACAAACATGGTTGGGTGTTTAACGAGCCCGTTAATGCTAAACAGTTGGGGCTTCATGATTACCATGACATTATTAAACATCCGATGGATTTGGGCACGATCAAGAGTCGTCTTGCACAGAACTTCTACAAGTCTCCCATGGAGTTTGCAGAGGATGTTAGACTCACATTTCGTAACGCCATGACGTATAATCCAAAAGGGCAAGATGTACATGTTATGGCTGAGCAGTTATCCAATATTTTTGAAGAAAGGTGGGCTGTGATTGAATCAGAAGCTAATCAAGATTTGAGATATGGAATGATTTATGACGCGAACACTCCAACTCCGACTTCAAGAAAGGTTCCTCATTTTGCACATGCTCCTTCAAGAATGCTGTATAGGTCAGAATCAATGAACTTGCCTGTGATGAATATGCAAAAACCCTCAAAGATTATGCCGACAGTGAGGACACCTGTACCGAAGAAACCTAAAGCCAAGGACCCTAACAAGAGGAACATGACTTATGAAGAGAAGCAGAAGCTTAGTACAAATCTTCAGAGTTTACCTTCTGAAAAGCTTGACAGCATTGTTCAGATAATCAAGAAGAACACCTCACTTTCTCAACATGATGATGAGATTGAAGTTGATATTGATAGCGTTGATATAGAAACTCTTTGGGAGCTTGATAGGTTTGTCACGAATTATAAAAAGAATTTGAGCAAGCATAAAAGGAAAGCTGCACTTGCTCAACAAGCGAGGCTAGAAGCTGGTGATGTTAATCATGCCGTGAACCCATCAACATCCATTCCGGAGACCCCCAAAGAAAATAAAACAAATGAAAAGACTCTTGCTAGTACACCGCATAATCAAGGAGGGGGAGGAGAAAATGCCAGTAGCTCAAGCAGTTCTAGCAGTGATTCTGGATCCTCTTCAAGTGATTCAGATAGTGATAGTTCGTCTGAAGATGGATCAGATGCAGGTCATTCACCTAGAAGTTGA 1938 44.27 MDSGVLDADRISKGKSKWGEGSKVYTRRIKTTTNNTTTTTTTTATATTAVAAAASASSPTPTATVTAASPTTTPNNGQTLATELPDYEIRRTLSPVVEAFDDHSIREASGNGVVKPVVVVVDGRVRINVRAAKAAKNEVIELMETMKAELERVRRVAQRLEDKEAELTAFSTVDGVAGDGDGEAYDHLQYSGNDAVDRRALLRVNSEMGTDYMEDRRALMRINSEVGSVTNSDIRPFRQISVSVVNNNHGVGEFVEKEKRTPKANQYYRNSDFLLGKDRLPPETNKRRKSNSGRKHSKESDYVRNQMFKNCNNLLQRLMKHKHGWVFNEPVNAKQLGLHDYHDIIKHPMDLGTIKSRLAQNFYKSPMEFAEDVRLTFRNAMTYNPKGQDVHVMAEQLSNIFEERWAVIESEANQDLRYGMIYDANTPTPTSRKVPHFAHAPSRMLYRSESMNLPVMNMQKPSKIMPTVRTPVPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDSIVQIIKKNTSLSQHDDEIEVDIDSVDIETLWELDRFVTNYKKNLSKHKRKAALAQQARLEAGDVNHAVNPSTSIPETPKENKTNEKTLASTPHNQGGGGENASSSSSSSSDSGSSSSDSDSDSSSEDGSDAGHSPRS 645
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02483 645 CDD Bromo-plant1 307 405 IPR037377 -
Fra11g02483 645 MobiDBLite consensus disorder prediction 279 302 - -
Fra11g02483 645 Coils Coil 545 565 - -
Fra11g02483 645 Pfam Bromodomain extra-terminal - transcription regulation 486 546 IPR027353 -
Fra11g02483 645 ProSiteProfiles NET domain profile. 476 556 IPR027353 -
Fra11g02483 645 SUPERFAMILY Bromodomain 287 412 IPR036427 GO:0005515(InterPro)
Fra11g02483 645 Gene3D - 274 418 IPR036427 GO:0005515(InterPro)
Fra11g02483 645 PANTHER OSJNBA0053K19.4 PROTEIN 34 637 - -
Fra11g02483 645 ProSiteProfiles Bromodomain profile. 319 391 IPR001487 GO:0005515(InterPro)
Fra11g02483 645 Coils Coil 129 166 - -
Fra11g02483 645 SMART bromo-6 304 410 IPR001487 GO:0005515(InterPro)
Fra11g02483 645 MobiDBLite consensus disorder prediction 275 302 - -
Fra11g02483 645 MobiDBLite consensus disorder prediction 569 645 - -
Fra11g02483 645 MobiDBLite consensus disorder prediction 52 78 - -
Fra11g02483 645 Gene3D - 479 558 IPR038336 -
Fra11g02483 645 MobiDBLite consensus disorder prediction 574 630 - -
Fra11g02483 645 Pfam Bromodomain 311 395 IPR001487 GO:0005515(InterPro)
Fra11g02483 645 PRINTS Bromodomain signature 322 335 IPR001487 GO:0005515(InterPro)
Fra11g02483 645 PRINTS Bromodomain signature 338 354 IPR001487 GO:0005515(InterPro)
Fra11g02483 645 PRINTS Bromodomain signature 354 372 IPR001487 GO:0005515(InterPro)
Fra11g02483 645 PRINTS Bromodomain signature 372 391 IPR001487 GO:0005515(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02483 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
89433 Fra11g02483 Fra8g00991
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:78510172 Fra8g01214 Fra-Chr8:12202359 dispersed
Fra Fra-Chr13:31586806 Fra11g02483 Fra-Chr11:78510172 transposed
Fra Fra-Chr9:18711590 Fra11g02483 Fra-Chr11:78510172 transposed
Fra Fra-Chr10:6895878 Fra11g02483 Fra-Chr11:78510172 wgd
Fra Fra-Chr11:78510172 Fra8g00991 Fra-Chr8:9366948 wgd