AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02484 ATGGCGACTCGCGTTCTCCTTCGCACTCTTCTTTCCTCCGTCAATCAAACCCTAATCCCCCGTTCATTCACCAATTCATCTTATCTCCTCCGTCTCCGCCCCATCATCGCCGTCGCCGCCGCGAATCTCCGCCAGTCCTCCGTCTCACCGGCGAATCTCCGTGCTTTCTCCACACGACCGACTACTTCTTCACTAAACGATTCGAACCCTAACTGGTCTAATCGTCCCCCAAAGGAGACGATTCTTCTCGACGGTTGCGATTTCGAACACTGGCTTGTGGTGATGGAGAAACCCGAAGGTGAGCCCACCAGAGATGAGATAATTGAATCGTATATCAATACCCTAGCTAAGGTTGTCGGCAGTTATGATGAAGCGAGGATGAAGATTTACTCTGTTTCGACAAGATGTTATTATGCCTTTGGAGCTTTAGTGTCTGAAGAGCTTTCTTACAAGCTTAAGGAATTACCTGGAGTTCGTTGGGTGCTGCCTGATTCTTACTTGGATGTTAAGAACAAGGATTACGGAGGTGAACCTTTTATTGATGGGAAGGCTGTTCCTTATGATCCAAAGTACCATGAGGAATGGATCAGAAACAATGCTCGCGCCAATGAGAGAAACAGGAGGAATGACAGGCCTCGCAACTTTGATCGTTCAAGAAACTTTGAAAGAAGAAGAGAGAACATGCAAAGCAACCGTGGACCTCCCAACATGAGCGGGCCACCGCCCAACAACATGGGTGGTCCACCACCCAACATGAGCGGTCCACCGCCCAATAACATGGGCGGTCCACCACCCAACATGGGAGGCCCACCGAACATGGCTGGTGGTCCACCAAACATGGGAGGAAGGCCCAATAACTGGAATGGGCCCCCACCACCCTACAGCGGAGGGCCGCCAAACATGGGAGGACCGAGGCCTAATACGGCTCCTAACTACCAGCAGCAGGGGCGGTATGGACCAAATAATGGAAACATGCCATATCAATCTGGGCCCGGTCCCAACAGTTATCCTCCAAATGCAGGCAGTGGAAACCCGTATCAGCCTCAGGATGTACCTGGAAGAGACATGCCCCCTTCAGCCAACTATGAGTAA 1092 51.37 MATRVLLRTLLSSVNQTLIPRSFTNSSYLLRLRPIIAVAAANLRQSSVSPANLRAFSTRPTTSSLNDSNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGEPTRDEIIESYINTLAKVVGSYDEARMKIYSVSTRCYYAFGALVSEELSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRSRNFERRRENMQSNRGPPNMSGPPPNNMGGPPPNMSGPPPNNMGGPPPNMGGPPNMAGGPPNMGGRPNNWNGPPPPYSGGPPNMGGPRPNTAPNYQQQGRYGPNNGNMPYQSGPGPNSYPPNAGSGNPYQPQDVPGRDMPPSANYE 363
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02484 363 MobiDBLite consensus disorder prediction 284 305 - -
Fra11g02484 363 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 16 229 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Fra11g02484 363 MobiDBLite consensus disorder prediction 306 346 - -
Fra11g02484 363 MobiDBLite consensus disorder prediction 203 229 - -
Fra11g02484 363 Pfam Multiple organellar RNA editing factor 1, MORF domain 88 179 IPR054059 -
Fra11g02484 363 MobiDBLite consensus disorder prediction 235 272 - -
Fra11g02484 363 MobiDBLite consensus disorder prediction 203 363 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02484 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
89434 Fra11g02484 Fra6g01217
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:78515189 Fra4g00461 Fra-Chr4:41054362 dispersed
Fra Fra-Chr15:582899 Fra11g02484 Fra-Chr11:78515189 transposed
Fra Fra-Chr2:65180134 Fra11g02484 Fra-Chr11:78515189 transposed
Fra Fra-Chr11:78515189 Fra6g01217 Fra-Chr6:61813025 wgd