AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Fra11g02486 | ATGAAGGGGGATTGCATCAACTCCTTAAAGAGGTTATTAAGCTGTGGTATCAATGATCTGCATGATGATGGTTTCGAGGGTTCAGTGAACGAGAATCGCATTTTTAGAGAGGTCTTCTTCGGACAGGAAAGTGGTAAAATTGATGGAATTAGTAAAAAGTACGATGTAACCGGAGCAATAAATTTTGAAAATGACAAAAAGATCTCTAAAGACATCTCATTCTGTTCAGACAGTGGCAGTTCAGTCATGACAAATCAGGAAGACTTTCAGAATATGAAGGAAGATTTTGGACAAGGTGGCATATCTGAAGAGTTTGCTTTATTTACAAATGCCTCTGATGTTGTACTTAAGCGAAGAAAGATGTCAGCTGAAGAATGTCGTGAGACTAAATATTATCCAGGAAAGTTAGTTAATTCTTCAATTTCATCAAAAACAGTAAATTTTAACTCAAGTGATCAGAAAACATATGATGTAAGTAAGGCTATTGCACCTACAGTTCAATGTTTCAAGAAAAGATGGAAAGATTCATCTTTCATTGAACTAGATAAAGATGAGTTATTAACTCCCCCTAAAGATTCTGCCACAAATCCTAAACCTGTTTTGCGTTATCACACTTATTGCTTACTTAAAGCAGCAGGGTGGTTAATTGGGAGGCGTAACAGAAAAGGACACGGGGAGTATATCTTCAAAACACCTGAAGGAAAGCCGATTCGGGAATTCCGTAGATCATGGAACATGTGTGGTCAAAGGCTAGTCAAGGATGCAAGATTTGTTGGTGTATGTAATGGCACGCGGTGGACTAGTTTGGCTCATTTTTGGTCTGATTTTTCTAATGCATTGATCGAGGTTGAAAATTTGAGAAATTTGGGAACTACTACTGCATTAGCACATTGGTGGTACTTGCTTGATCCCTTTGCGAATGTGGTGTTCATAGACAGAAGTTTTCCTTATTTGAAACAAGGGAAAGAAGTCAAAGCCCGGAGAACTGTGGTCAACCATTCTGGAAGTTCTAAGTCCAATAAGCGTCAAAAGGAGAAAAAGGTAAACTGTCACCTTAAAGATGACGATCTTTTGCTCTCGGCTATATTAACTAACCGATCTACTAACAAATGTTTGGGTGTTAAAAGAAAGTACAAGAGTAAGAAAGGCAGTTGCAGATTGCTCCCACGTTTTGGAAAATGTTCTGGGTTAGGGGTAAGAACAGTATTATCTCGGTTGATAGATCTTGGGGTTATTCGTGTCAACGAAGTGATCCAGTATAGGAATCCACAGGATGATTCAGTGGTCAAGCATGGTTTAGTGACTCAAAATGGTATATTGTGTCAGTGCTGTAAGAAGGTGCTCTCTGTTTCAGAGTTCAAGAATCATGCTGGTTTTAGCATGAAGTGTTCACGTTTGAACCTTTTTATGGAATCCGGAAAATCATTCACTTTATGTCTACTGGAAGCTTGGTCAACTGAATACAAGGTCAGGAAAGGTACCAAACGAGTGGTACAGTTTGATGAGATGGACCAAAGTGACGATAGTTGTGGCCTTTGTGGTGATGGTGGTGAGTTGATATGCTGTGATAATTGCCCTTCTACATTTCATCAAGCATGCTTGTCCACACAGGAGCTACCTGAAGGCAATTGGTATTGTTCAACATGTTGTTGCAGCTGGTGCGGGAATGTAGTCAGTCAAGTCCAGGCTTCAATCTCTAATGCTCTGGAATGTTTGCAATGCGAACGCAGATATCATGAGGAATGCATCAAAGAGAACAGAATCAAGAAAGATTTAGTTGGTCCTGCCTGGTTCTGTGGAGAAACATGTGAAAAGATCCATTCGGGTCTTGATTCCCAAATTGGATGTGTGAACCCACTTTCTGATGGTTATTCGTGGACCCTACTGAAGTGTATTCAAGGTGACCAAAAGGTTCATTCTGGTCAAAATTTTGTTGCCCTCAAAGCAGAATGCAATCTAAAACTAGCTGTTGCCCTGACTTTAATGGAGGAATGCTTTCTTCCCATGGTGGATACAAGAACAGGCATCCATATGCTACCCCATGTAGTGTACAATTGGGGATCAGAATATGTTCGTCTTAACTATGAGGGATTTTACACAGTGGTCTTGGAGAAAGATGACATTTTACTCTCTGTAGCATCCTTAAGGATTCATGGTGCAACGGTTGCAGAGGTGCCCCTCATTGCAACATGTAGCAGATACAGGCGCCAAGGAATGTGTAGGCGTCTCATGAATGCTATTGAAGAGATGTTGAAGTCATTCAAAGTTGAGAAGTTGGTGATATCTGCCATCCCAAGCTTAGTTGAGACGTGGACCAATGGCTTCGGTTTCACACCCTTGGAAGCCAGTGACAAGAAGAGCCTGGACAAAACCAACCTCATGGTGTTCCCGGGAACCGTTTGGCTTAAGAAGCCCATGTACCAAGAGTCAACGCAGAGCACACAATTTTTAGGTACAACAATGGAAGCTGTATCTTCAGACATGAATGGTGATATTGAAGAAGCGGCGTCTCTGGTGGATACAATGCCCGTTTATGACATGACATTCTTGCAAGAGTTGGAAACCGTTATGATAAGTTGGTAG | 2583 | 41.04 | MKGDCINSLKRLLSCGINDLHDDGFEGSVNENRIFREVFFGQESGKIDGISKKYDVTGAINFENDKKISKDISFCSDSGSSVMTNQEDFQNMKEDFGQGGISEEFALFTNASDVVLKRRKMSAEECRETKYYPGKLVNSSISSKTVNFNSSDQKTYDVSKAIAPTVQCFKKRWKDSSFIELDKDELLTPPKDSATNPKPVLRYHTYCLLKAAGWLIGRRNRKGHGEYIFKTPEGKPIREFRRSWNMCGQRLVKDARFVGVCNGTRWTSLAHFWSDFSNALIEVENLRNLGTTTALAHWWYLLDPFANVVFIDRSFPYLKQGKEVKARRTVVNHSGSSKSNKRQKEKKVNCHLKDDDLLLSAILTNRSTNKCLGVKRKYKSKKGSCRLLPRFGKCSGLGVRTVLSRLIDLGVIRVNEVIQYRNPQDDSVVKHGLVTQNGILCQCCKKVLSVSEFKNHAGFSMKCSRLNLFMESGKSFTLCLLEAWSTEYKVRKGTKRVVQFDEMDQSDDSCGLCGDGGELICCDNCPSTFHQACLSTQELPEGNWYCSTCCCSWCGNVVSQVQASISNALECLQCERRYHEECIKENRIKKDLVGPAWFCGETCEKIHSGLDSQIGCVNPLSDGYSWTLLKCIQGDQKVHSGQNFVALKAECNLKLAVALTLMEECFLPMVDTRTGIHMLPHVVYNWGSEYVRLNYEGFYTVVLEKDDILLSVASLRIHGATVAEVPLIATCSRYRRQGMCRRLMNAIEEMLKSFKVEKLVISAIPSLVETWTNGFGFTPLEASDKKSLDKTNLMVFPGTVWLKKPMYQESTQSTQFLGTTMEAVSSDMNGDIEEAASLVDTMPVYDMTFLQELETVMISW | 860 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Fra11g02486 | 860 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 657 | 807 | IPR000182 | GO:0016747(InterPro) | |
| Fra11g02486 | 860 | Pfam | PHD-finger | 510 | 549 | IPR019787 | - | |
| Fra11g02486 | 860 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 696 | 779 | IPR016181 | - | |
| Fra11g02486 | 860 | SUPERFAMILY | FYVE-PHD zinc finger | 496 | 550 | IPR011011 | - | |
| Fra11g02486 | 860 | PANTHER | PHD FINGER PROTEIN 12 | 141 | 818 | - | GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER) | |
| Fra11g02486 | 860 | ProSiteProfiles | Zinc finger PHD-type profile. | 507 | 552 | IPR019787 | - | |
| Fra11g02486 | 860 | CDD | PHD1-AIRE | 510 | 549 | - | - | |
| Fra11g02486 | 860 | Pfam | Tify domain binding domain | 432 | 482 | IPR032308 | - | |
| Fra11g02486 | 860 | CDD | NAT-SF | 701 | 762 | - | - | |
| Fra11g02486 | 860 | SMART | PHD-3 | 509 | 550 | IPR001965 | - | |
| Fra11g02486 | 860 | SMART | PHD-3 | 551 | 603 | IPR001965 | - | |
| Fra11g02486 | 860 | Gene3D | - | 685 | 791 | - | - | |
| Fra11g02486 | 860 | Pfam | Acetyltransferase (GNAT) family | 694 | 760 | IPR000182 | GO:0016747(InterPro) | |
| Fra11g02486 | 860 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 494 | 568 | IPR013083 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Fra11g02486 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 89435 | Fra11g02486 | Fra2g00936 | |
| 89436 | Fra11g02486 | Fra6g01216 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Fra | Fra-Chr11:78528006 | Fra6g00762 | Fra-Chr6:53985987 | dispersed | |
| Fra | Fra-Chr11:78528006 | Fra2g00936 | Fra-Chr2:60674590 | wgd | |
| Fra | Fra-Chr11:78528006 | Fra6g01216 | Fra-Chr6:61770777 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Fra1g01263 | . | 1545 | 1704 | PHD Transcription Factor family | AT5G35210 | 35.0 | 4.68e-22 | 99.4 | |
| Fra1g01755 | . | 326 | 662 | PHD Transcription Factor family | AT5G22260 | 28.775 | 2.51e-39 | 151.0 | |
| Fra1g01775 | . | 15 | 672 | PHD Transcription Factor family | AT5G22260 | 49.925 | 0.0 | 631.0 | |
| Fra1g01776 | . | 212 | 672 | PHD Transcription Factor family | AT5G22260 | 46.822 | 2.87e-140 | 415.0 | |
| Fra2g00566 | . | 145 | 261 | PHD Transcription Factor family | AT5G57380 | 30.0 | 6.18e-09 | 56.2 | |
| Fra2g00690 | . | 1546 | 1704 | PHD Transcription Factor family | AT5G35210 | 29.24 | 7.20e-13 | 70.1 | |
| Fra2g00936 | ACH | 506 | 1031 | PHD Transcription Factor family | AT3G14980 | 52.247 | 1.13e-179 | 545.0 | |
| Fra2g01433 | . | 519 | 925 | PHD Transcription Factor family | AT1G05380 | 37.41 | 5.11e-91 | 299.0 | |
| Fra2g01557 | WGDA | 81 | 663 | PHD Transcription Factor family | AT5G22260 | 30.832 | 4.77e-82 | 272.0 | |
| Fra3g00216 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 29.851 | 1.48e-09 | 59.3 | |
| Fra3g00896 | WGDA | 1542 | 1706 | PHD Transcription Factor family | AT5G35210 | 86.061 | 5.73e-87 | 293.0 | |
| Fra3g01022 | . | 218 | 973 | PHD Transcription Factor family | AT2G36720 | 43.807 | 0.0 | 650.0 | |
| Fra4g00153 | . | 685 | 760 | PHD Transcription Factor family | AT4G14920 | 37.037 | 5.59e-07 | 52.8 | |
| Fra4g00432 | . | 130 | 217 | PHD Transcription Factor family | AT5G57380 | 29.293 | 1.70e-08 | 55.5 | |
| Fra4g00867 | . | 130 | 215 | PHD Transcription Factor family | AT5G57380 | 30.769 | 2.35e-10 | 62.8 | |
| Fra5g00413 | . | 50 | 93 | PHD Transcription Factor family | AT5G35210 | 43.478 | 6.47e-06 | 43.5 | |
| Fra5g00426 | . | 41 | 831 | PHD Transcription Factor family | AT3G53680 | 52.714 | 0.0 | 852.0 | |
| Fra5g00814 | ACH | 681 | 760 | PHD Transcription Factor family | AT4G14920 | 32.941 | 6.51e-07 | 52.4 | |
| Fra6g00762 | . | 7 | 983 | PHD Transcription Factor family | AT4G14920 | 44.862 | 0.0 | 785.0 | |
| Fra6g01216 | ACH | 1 | 1031 | PHD Transcription Factor family | AT3G14980 | 43.059 | 0.0 | 766.0 | |
| Fra6g01675 | ACH | 46 | 597 | PHD Transcription Factor family | AT3G24440 | 47.759 | 2.96e-170 | 496.0 | |
| Fra7g00728 | . | 1 | 506 | PHD Transcription Factor family | AT2G18880 | 36.549 | 3.89e-92 | 290.0 | |
| Fra7g00746 | . | 1 | 506 | PHD Transcription Factor family | AT2G18880 | 36.364 | 2.07e-92 | 291.0 | |
| Fra7g01446 | . | 130 | 264 | PHD Transcription Factor family | AT5G57380 | 25.49 | 1.12e-09 | 60.1 | |
| Fra7g02619 | ACH | 685 | 760 | PHD Transcription Factor family | AT4G14920 | 35.802 | 1.41e-07 | 54.3 | |
| Fra8g00199 | WGDA | 81 | 661 | PHD Transcription Factor family | AT5G22260 | 32.206 | 2.19e-86 | 284.0 | |
| Fra8g01738 | . | 354 | 984 | PHD Transcription Factor family | AT4G14920 | 52.508 | 0.0 | 687.0 | |
| Fra8g01990 | ACH | 1 | 685 | PHD Transcription Factor family | AT4G30200 | 45.259 | 6.63e-178 | 519.0 | |
| Fra9g00248 | . | 616 | 659 | PHD Transcription Factor family | AT2G36720 | 45.098 | 2.17e-06 | 50.4 | |
| Fra9g01388 | ACH | 685 | 760 | PHD Transcription Factor family | AT4G14920 | 32.099 | 2.57e-06 | 50.4 | |
| Fra9g01741 | . | 39 | 264 | PHD Transcription Factor family | AT5G57380 | 23.387 | 8.25e-10 | 60.5 | |
| Fra9g02070 | . | 1 | 1595 | PHD Transcription Factor family | AT5G12400 | 36.874 | 0.0 | 911.0 | |
| Fra10g00567 | . | 21 | 926 | PHD Transcription Factor family | AT1G05380 | 42.688 | 0.0 | 671.0 | |
| Fra10g00790 | ACH | 45 | 593 | PHD Transcription Factor family | AT3G24440 | 41.331 | 1.43e-132 | 398.0 | |
| Fra10g00915 | . | 351 | 976 | PHD Transcription Factor family | AT5G58610 | 38.068 | 1.00e-143 | 460.0 | |
| Fra11g00694 | ACH,WGDA | 312 | 926 | PHD Transcription Factor family | AT1G05380 | 44.833 | 3.57e-174 | 543.0 | |
| Fra11g01284 | ACH | 1 | 341 | PHD Transcription Factor family | AT4G30200 | 49.854 | 2.96e-95 | 302.0 | |
| Fra11g02486 | ACH | 521 | 1031 | PHD Transcription Factor family | AT3G14980 | 54.563 | 0.0 | 565.0 | |
| Fra11g02549 | . | 611 | 658 | PHD Transcription Factor family | AT5G12400 | 40.0 | 3.78e-07 | 50.4 | |
| Fra13g00608 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 26.667 | 1.67e-06 | 49.3 | |
| Fra13g00927 | WGDA | 111 | 973 | PHD Transcription Factor family | AT2G36720 | 42.435 | 0.0 | 620.0 | |
| Fra13g01537 | . | 565 | 974 | PHD Transcription Factor family | AT5G58610 | 46.818 | 3.83e-127 | 405.0 | |
| Fra14g00025 | . | 318 | 403 | PHD Transcription Factor family | AT5G22260 | 37.363 | 3.01e-06 | 48.5 | |
| Fra16g01047 | . | 717 | 801 | PHD Transcription Factor family | AT3G14980 | 30.556 | 1.63e-07 | 54.3 | |
| Fra16g01391 | WGDA | 1542 | 1704 | PHD Transcription Factor family | AT5G35210 | 86.503 | 8.63e-87 | 292.0 | |
| Fra16g01484 | . | 519 | 569 | PHD Transcription Factor family | AT2G36720 | 37.255 | 1.64e-06 | 44.7 | |
| Fra16g01485 | . | 619 | 970 | PHD Transcription Factor family | AT2G36720 | 40.0 | 5.08e-94 | 300.0 | |
| Fra16g01486 | . | 519 | 978 | PHD Transcription Factor family | AT2G36720 | 42.733 | 2.64e-137 | 419.0 | |
| Fra16g01491 | ACH | 512 | 970 | PHD Transcription Factor family | AT2G36720 | 41.202 | 2.06e-129 | 399.0 | |
| Fra16g01492 | . | 519 | 978 | PHD Transcription Factor family | AT2G36720 | 42.299 | 7.31e-137 | 418.0 | |
| Fra16g01917 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 28.261 | 1.94e-08 | 53.5 | |
| Fra16g02031 | . | 615 | 661 | PHD Transcription Factor family | AT5G22260 | 44.681 | 1.85e-06 | 50.1 | |
| Fra17g00481 | . | 165 | 301 | PHD Transcription Factor family | AT3G53680 | 51.825 | 5.44e-41 | 153.0 | |
| Fra17g00782 | ACH,WGDA | 312 | 945 | PHD Transcription Factor family | AT1G05380 | 45.71 | 1.03e-170 | 535.0 | |
| Fra18g00815 | WGDA | 128 | 986 | PHD Transcription Factor family | AT2G36720 | 41.6 | 0.0 | 627.0 | |
| Fra18g01874 | . | 130 | 272 | PHD Transcription Factor family | AT5G57380 | 30.675 | 1.99e-10 | 61.6 | |
| Fra10000125.1g00016 | . | 650 | 723 | PHD Transcription Factor family | AT5G36670 | 39.241 | 2.97e-06 | 50.1 | |
| Fra10000046.1g00006 | . | 15 | 661 | PHD Transcription Factor family | AT5G22260 | 34.873 | 2.37e-117 | 363.0 |