AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02496 ATGGCTCCTTTATCTTCTTCCTTTTCATTCATCTTCTTCTGCTTCATCTTCCGATCATTCTCCGTCTCCGACGCCGTTGTTCCGGCCAACGAAACCTTTCGCTACGTCAACGAAGGCGACTTCGGAATCTACGACTCCGAATACGCACCGACATACCACCCCCTTCCGCCATTCACCACCCCCTTCCAACTCTGTTTCTACAACACCACCCCAAACGCGTACACACTCGCCCTCCGCATGGGGACGAGGCGCGACGGCACCGTCATGCCATGGGTCTGGGAAGCCAATCGAGGCAAACCGGTCCGCGAAAGCGCAACGTTCTCCTTAGGCTCGGACGGAAACCTCGTCCTCGCGGAAGCAGACGGTCAGATAGTATGGCAAACCAACACCGCCAATAAAGGTGTTGTCGGTTTCGCCATACTATCTAACGGAAACATCGTGCTCCGTGACTCAATAGGTAGCTTTGTCTGGCAAAGCTTTGACTCCCCCACTGACACTCTTTTGGTGGGCCAGACTCTCAAAGTAAAAGGTGGGCCCACCAAACTGATCAGCAGGGAGTCGATCAGTAACAACAATAACGGAGCTTATAGCTTCGTTATTGAGCCTAAAAGATTGGCTTTGTATTACAAGAATAATATGCGTTACTGGTCAACTACTTTCGCCGATCTATACACACAAAATTTGAATATTGTAAATGCAACGTTAGATATTGCGGAAACTGAATATGAAGAAAACAATTTTCACACACTAAGGTGTGGACTTGATAAACCAAGTGTTACCGTATACCCTTCTTTAGATTTGGGTACAGTTCGGTACAATAGCTCGTTATCGTATCTTCGATTGGGGATCGACGGGAACCTAAGGCTATTCACCTACCGCGCGAATGTGCGGGGGAACGCGTGA 903 48.95 MAPLSSSFSFIFFCFIFRSFSVSDAVVPANETFRYVNEGDFGIYDSEYAPTYHPLPPFTTPFQLCFYNTTPNAYTLALRMGTRRDGTVMPWVWEANRGKPVRESATFSLGSDGNLVLAEADGQIVWQTNTANKGVVGFAILSNGNIVLRDSIGSFVWQSFDSPTDTLLVGQTLKVKGGPTKLISRESISNNNNGAYSFVIEPKRLALYYKNNMRYWSTTFADLYTQNLNIVNATLDIAETEYEENNFHTLRCGLDKPSVTVYPSLDLGTVRYNSSLSYLRLGIDGNLRLFTYRANVRGNA 300
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02496 300 CDD B-lectin 46 163 IPR001480 -
Fra11g02496 300 Pfam D-mannose binding lectin 92 176 IPR001480 -
Fra11g02496 300 Gene3D - 58 161 IPR036426 -
Fra11g02496 300 SMART blect-4 46 163 IPR001480 -
Fra11g02496 300 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 62 292 IPR051343 -
Fra11g02496 300 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 218 IPR036426 -
Fra11g02496 300 ProSiteProfiles Bulb-type lectin domain profile. 40 161 IPR001480 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02496 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:78632809 Fra11g02521 Fra-Chr11:78836653 dispersed
Fra Fra-Chr11:78615778 Fra11g02496 Fra-Chr11:78632809 tandem