AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02559 ATGAGTGGGGGTAGGGTTTCCATTCCCAACAATGTGAGGAAGACGATCCAGAACATCAAGGAGATCACGGGTAATCACAGTGAAGATGAGATATATGCAATGCTTAAAGATTGTTCTATGGATCCGAACGAGACCGCTCAGAAGCTCCTCTTGCAGGATCCATTTCATGAAGTTAAGAGGAAGCGTGACCGCAAGAAAGAGAATGTGAATAAAGAACCTACGGAGTCCAGATGGAAACCTGGGATGCAGGGAAGGGGGAACAGGGGTGGCAGGTCGAACTACTCGTCTCGTCGCATTTCTAATGATGTAGGTGGTGGCAAGCCATTACTTTCTGTAAAGGAAAATGGAATGAGTAAAGGTGCAGATGATGGTCCAAATCAGTCAATGCCTCAGGGTCAGAAGAATAAAGAGACATTTATGGTTAAAAGCCCTTCCCATGATGTACCTGATGGAATTGCACATTCCTCTGTGGGAAGTGATGAGAAGAAATCTGTAGCGGTTCCTGCTGTTGAGGCAAGTAAGGAACCCACTGTTGGTGATAGTCATGGAACCCTCATCTCGAGTGTCAATGAAACATCAGCTTCTACTTCTAAGATACCATCACCTTCACCAGGGTTACAATTGTCTGATAAAGATCCTATTCTGAAGCCTTCACAAGATTCACGGCTCCTTGTGGGTACAATCAGACGTGAAGTTGGGAGTCAACAAACTCTTGTTGACCAAATACACAAGACTCCCCATGAGACTGAATCAACTGCATCAGGTTCTGAGGTTGGAAACTCCTCCGTGCAAGGGAAGGCACAATCTTCTCATGTCCCACTTTCAATTTCCAGGCCTTCTTCAAACTATAATAATAGGCAGCAACAAGCAATTGGGCCTCAAAAAGGTCCGAGTATGGAATGGAAACCAAAACCAACAAATCCAGTTCTTGCTCAAGGGACCGGGGCAACTGAGCCAGTTAAGGTGCATGTGGTTCAAGTTGAAAGTCAAACTCCAAACCCGTTTGCAGCCCGTAATCTTGATTTAAAGGGCACGACCCATGAGCTGGAGAAGAAGCTAGAGGAATCACACATATCAGATGACCAACATGTTATTATTCCAAATCACCTCCATGTTCCTGAAGCTGAAAAACTCGGGTTCTATTTTGGGAGTTTTGATGCCAGCTTTAGTCTTAACATGACCTCCTCGAACATGTCTGGGTCTGGGCTCAGGGCTGAGCACGTTAGTGACAAGAGTTCCGAGGCTTCCGAGGTGGTTGATGAAAGTATAGACGAGCAGCCCAGAGATCAAAATAATGCGTCGGCAAGTGCCGATGATGAAGACCATCTTGATCATCCATCATCATCTGATAACATGCCCGAGAATCTATCAGCCGAAGGTGACTTGTCATCAAATTCAGGCTTCAATCACCAAGAATCCAAACAAGAGACTTCACTTCCAACAGCAAGCCATCAACACCCAATTCTTCACACGTCTCCTAACTTAAGTTTTGGCTTCATTCCTCCAATGATTGGGACCCACCCAGCATCTTTTGAGACCAACGAGTCTCATAGTCATGATGGTTCGCAAGTCCCAAATGTTGTATCTCAGCAACCATTTGACCCAGCAAGCTATTATGCTCAATTTTATCGTCCTGGTGCTGACGTGGATGGCCGCATGTCACCCTTTCATACAACCGGGGTTCCAACCAAGTTTAATGGAAATATTCCTGTGTTATCTCCTCAGGCTTCTCATTCTTCTCAAGAGGTTGGGAACTCATTGATGTTATCTGGTGCTGGTCCAACACCAATAGCCACTACACAAACTGGCGGATTTATGCAAACCTCCATAGCCATGACTCAGCAACCATTACCCATTTTCAGGCAACCAACTGGAGTTCATTTACCACATTACCCTCCAAATTATATCCCATACGGGCCATATTTCCCACCATTTTATGTTCCTCCACAAGCTATCCATCAATTTTTGAGTAATAATACATTCCCACAACCTCCTCAAGCTGGTAGTATGTACCCGCCCCCACCAGTGGCTAGCTCTAAATACCCACTTCCACAATACAAAACGGGAGGTAATACAGGGAACCCGGTTAATATTGGAATGCCTGGAAGCTATGGACCGTATGGCTTTAACGCAGCTGGCTATAACTCTGGTTCAGCAGCTACTGCTGGCAATTCAACTTCTGATGAAGACCTAGGTGGGTCCCAGTTTAAGGAAAGTAATGTCTACATTACTGGACAGCAGAGTGAAAATTCAGGTGTATGGATGGCTGCACCGGGTCGAGACATATCTGGTATGCAGGCTAATTCTTTCTATAACATTCCTCAAGGTGGTCAAGTTGCATATACGCCAACACAAGCCAGCCATGGATCTTTCGCCAGTCTTTATCACCACCCGGCCCAACCAGTAACCACCAGTGCGGTTCACCCACTTCTCCAACAGTCCCATGGACCCGGCGTTGACATGGCAGGACCCACACCTCAAATCAACTGGCCTAATAACTACTGA 2505 45.95 MSGGRVSIPNNVRKTIQNIKEITGNHSEDEIYAMLKDCSMDPNETAQKLLLQDPFHEVKRKRDRKKENVNKEPTESRWKPGMQGRGNRGGRSNYSSRRISNDVGGGKPLLSVKENGMSKGADDGPNQSMPQGQKNKETFMVKSPSHDVPDGIAHSSVGSDEKKSVAVPAVEASKEPTVGDSHGTLISSVNETSASTSKIPSPSPGLQLSDKDPILKPSQDSRLLVGTIRREVGSQQTLVDQIHKTPHETESTASGSEVGNSSVQGKAQSSHVPLSISRPSSNYNNRQQQAIGPQKGPSMEWKPKPTNPVLAQGTGATEPVKVHVVQVESQTPNPFAARNLDLKGTTHELEKKLEESHISDDQHVIIPNHLHVPEAEKLGFYFGSFDASFSLNMTSSNMSGSGLRAEHVSDKSSEASEVVDESIDEQPRDQNNASASADDEDHLDHPSSSDNMPENLSAEGDLSSNSGFNHQESKQETSLPTASHQHPILHTSPNLSFGFIPPMIGTHPASFETNESHSHDGSQVPNVVSQQPFDPASYYAQFYRPGADVDGRMSPFHTTGVPTKFNGNIPVLSPQASHSSQEVGNSLMLSGAGPTPIATTQTGGFMQTSIAMTQQPLPIFRQPTGVHLPHYPPNYIPYGPYFPPFYVPPQAIHQFLSNNTFPQPPQAGSMYPPPPVASSKYPLPQYKTGGNTGNPVNIGMPGSYGPYGFNAAGYNSGSAATAGNSTSDEDLGGSQFKESNVYITGQQSENSGVWMAAPGRDISGMQANSFYNIPQGGQVAYTPTQASHGSFASLYHHPAQPVTTSAVHPLLQQSHGPGVDMAGPTPQINWPNNY 834
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02559 834 PANTHER FLOCCULATION PROTEIN (DUF1296) 1 834 IPR044277 GO:0051082(PANTHER)
Fra11g02559 834 MobiDBLite consensus disorder prediction 407 427 - -
Fra11g02559 834 MobiDBLite consensus disorder prediction 235 309 - -
Fra11g02559 834 MobiDBLite consensus disorder prediction 49 222 - -
Fra11g02559 834 MobiDBLite consensus disorder prediction 53 74 - -
Fra11g02559 834 Pfam GBF-interacting protein 1 N-terminal 8 67 IPR009719 -
Fra11g02559 834 MobiDBLite consensus disorder prediction 235 294 - -
Fra11g02559 834 MobiDBLite consensus disorder prediction 121 139 - -
Fra11g02559 834 SUPERFAMILY UBA-like 8 70 IPR009060 GO:0005515(InterPro)
Fra11g02559 834 MobiDBLite consensus disorder prediction 180 204 - -
Fra11g02559 834 MobiDBLite consensus disorder prediction 397 494 - -
Fra11g02559 834 MobiDBLite consensus disorder prediction 506 530 - -
Fra11g02559 834 MobiDBLite consensus disorder prediction 509 530 - -
Fra11g02559 834 MobiDBLite consensus disorder prediction 434 448 - -
Fra11g02559 834 MobiDBLite consensus disorder prediction 449 492 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02559 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
89461 Fra11g02559 Fra8g01033
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:79253861 Fra7g03495 Fra-Chr7:92173702 dispersed
Fra Fra-Chr11:75701979 Fra11g02559 Fra-Chr11:79253861 transposed
Fra Fra-Chr11:79253861 Fra8g01033 Fra-Chr8:9962931 wgd