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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02590 ATGTCGTTGGCAGTTGAATCGGTTGCTAGCGAAGAAAAGACAAATGGGTTTGAAGAAATTGTGGAGGAAAAACAGAGCATGAAGAGAACAGAGAGTGAATCCTCTGTTTATGAGAGTGAAGATGAAGGTGAAGATGATGCAGAGGATAATCGAATCGAATTGGGTCCTCAGTGTTCCCTCAAAGAACAAATTGAGAAAGATAAGGATGATGAGAGCCTCAGAAAGTGGAAAGAACAGCTACTTGGAAACGTTGATATTAATGATGTTGGAGAATCACTCGAACCAGAAGTGAAAATCATCAGCCTTTCGATCGCGTCTCCTGGGAGATCCGACATTGTTCTTGCAGTACCCGAAGATGGGAAACCGAAAGGGTTATGGTTTACGCTAAAAGAAGGTTGTCGTTACAGTTTAAGGTTCAAGTTTCATGTTAGTCATAACATTGTTTCAGGTTTAAAGTACACCAACAATGTATGGAGAACTGGTGTCAGAGTGGATAGAGTGAAACATATGCTTGGAACATTTGGTCCTCAACAAGAAGCATATACTTATGAGATGCCTGAGGAGACAACCCCATCTGGTTACTTTGCAAGAGGAACGTACTCTGCTAAAACAAAGTTTGTTGATGATGACAACAAGTGCTACTTGGAGATCAACTATACGTTCGATATCCGGAAAGATTGGGCGAAAGTTGAATGA 696 41.09 MSLAVESVASEEKTNGFEEIVEEKQSMKRTESESSVYESEDEGEDDAEDNRIELGPQCSLKEQIEKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKIISLSIASPGRSDIVLAVPEDGKPKGLWFTLKEGCRYSLRFKFHVSHNIVSGLKYTNNVWRTGVRVDRVKHMLGTFGPQQEAYTYEMPEETTPSGYFARGTYSAKTKFVDDDNKCYLEINYTFDIRKDWAKVE 231
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02590 231 FunFam Rho GDP-dissociation inhibitor 1 50 229 - -
Fra11g02590 231 PANTHER RHO GDP-DISSOCIATION INHIBITOR 28 227 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(InterPro)|GO:0007266(PANTHER)|GO:0016020(PANTHER)
Fra11g02590 231 MobiDBLite consensus disorder prediction 12 36 - -
Fra11g02590 231 MobiDBLite consensus disorder prediction 1 54 - -
Fra11g02590 231 PRINTS RHO protein GDP dissociation inhibitor signature 206 223 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Fra11g02590 231 PRINTS RHO protein GDP dissociation inhibitor signature 164 179 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Fra11g02590 231 PRINTS RHO protein GDP dissociation inhibitor signature 180 192 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Fra11g02590 231 PRINTS RHO protein GDP dissociation inhibitor signature 147 163 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Fra11g02590 231 Pfam RHO protein GDP dissociation inhibitor 39 226 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Fra11g02590 231 SUPERFAMILY E set domains 36 227 IPR014756 -
Fra11g02590 231 Gene3D Coagulation Factor XIII, subunit A, domain 1 49 229 IPR024792 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02590 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
89475 Fra11g02590 Fra8g01063
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:79459916 Fra13g00007 Fra-Chr13:1332458 dispersed
Fra Fra-Chr11:7602866 Fra11g02590 Fra-Chr11:79459916 transposed
Fra Fra-Chr11:79459916 Fra8g01063 Fra-Chr8:10326315 wgd