AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02601 ATGCGGTCATCCATGACAATTACAAGCCCTAGCTTCCCACCATTGCCCCAATTTCACCAATCGAACACCCATCACCAACCATACAAACAACCACCAATGATTACACTTCAAAACCCATCAAAACCCCATGATTTTGCCGCAAAATCCCTGAAAAATTCAGGGTTTTTATCGGCAATTGGGAACGCAATTGAAGAACAAGAGTATCGGAAAGCTAGGGCTGAAGTTGTTCGAAAAGGAACGGGGTTAGAGGGTTACAACATCGAGGGTCTTTCGATTGGTGGTCATGAGACTTGTGTTATTATTCCTGAATTCAAGTGTGCGTTTGATATCGGAAGGTGTCCCCCAAGAGCTGTTGCGATGAATTTCTTGTTTATTACTCATGCTCATCTTGATCACATTGGTGGGCTACCTATGTATGTGGCAACTCGCGGTTTATACAGCATGAGTCCTCCAACTGTATTTGTACCTCCTTCCATTAAAGAAGATGTTGAAAATTTGATTGAGCTTCACAGGAAGATGGGTGATGTGGAATTAAATCTTGATTTGGTTGCATTGGATGTAGGAGAAACGTACGAGCTAAGAAACGATCTTGTCGTACGCCCATTTAAAACTCATCACGTAATACCAAGTCAGGGTTATGTGATTTACTCAGTTCGTAAGAAACTGAAAAAGCAATACATGCACTTAAAAGGAAGGGAGATTGAGAAAAAGAAGAAATCTGGTGTTGAGATAACAGATATCATATTGTCGCCAGAAGTGGCATTCACTGGCGATACAAGTTCTGATTTTCTACTTGATCCACGAAGTTCTGATGCCTTGAGAGCCAAAATTCTCATAACTGAGGCTACTTTCTTGGATGACAAATGCGACATTGAGCATGCACGAGAACATGGTCACATGCATATTGACGAGATTATCGAGCATTCTGAGTGGATTAGGAACAAGGCAATTCTTTTGACTCATTTCTCATCGCGGTACCACATTGAGGAAATTCGTCAAGCTGTGACTAAGTTGCAGGCAAAGGTTTCAGCCAAAGTGGTACCACTTACAGAAGGTTTTAGATCATTGTACTCACCATGA 1080 41.67 MRSSMTITSPSFPPLPQFHQSNTHHQPYKQPPMITLQNPSKPHDFAAKSLKNSGFLSAIGNAIEEQEYRKARAEVVRKGTGLEGYNIEGLSIGGHETCVIIPEFKCAFDIGRCPPRAVAMNFLFITHAHLDHIGGLPMYVATRGLYSMSPPTVFVPPSIKEDVENLIELHRKMGDVELNLDLVALDVGETYELRNDLVVRPFKTHHVIPSQGYVIYSVRKKLKKQYMHLKGREIEKKKKSGVEITDIILSPEVAFTGDTSSDFLLDPRSSDALRAKILITEATFLDDKCDIEHAREHGHMHIDEIIEHSEWIRNKAILLTHFSSRYHIEEIRQAVTKLQAKVSAKVVPLTEGFRSLYSP 359
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02601 359 MobiDBLite consensus disorder prediction 1 33 - -
Fra11g02601 359 SUPERFAMILY Metallo-hydrolase-oxidoreductase 120 335 IPR036866 -
Fra11g02601 359 Pfam Beta-lactamase superfamily domain 119 322 IPR001279 -
Fra11g02601 359 Gene3D - 85 353 IPR036866 -
Fra11g02601 359 PANTHER TRNASE Z TRZ1 46 353 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02601 K00784 ribonuclease Z [EC:3.1.26.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:79549091 Fra7g03055 Fra-Chr7:87955343 dispersed