AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Fra11g02625 | ATGATCATACAGTTGTCAAATATGGGTACTTTATTCAAATCAAGCTTGATCTTGTTGTTCATTTGTTTTTTTCTCGCGCCTACTGCGTATTCGAGTCCTAATGACGGGTTGGTTAGAGTTGGACTCAAGAAGAGGAAAATCAACCAATTGAACCAAATTGGTCATATTGGCTCTAATGAAGGGAATGCTGGAAGAAATTACGGTTTTCGTGGTAATTTTAGGGATTCCGGAGGTGATGTTATTGCTCTAAACAACTTCATGGATGCTCAGTATTATGGTGAGATTGGTATTGGTACTCCGCCTCAGAAGTTTACTGTGATATTTGACACTGGTAGTTCTAATCTGTGGGTGCCTTCTACAAAGTGCTACTTCTCAGCAGCATGCTTTCTTCACTCAAAGTATAAGTCTAGCCAGTCAAGTTCCTATAAGAAAAATGGGAAATCTGCTGCAATTCAATATGGAACTGGCTCTATCTCGGGTTTCTTCAGCCAAGATTTGATCACACTTGGTGATCTTGTTGTGAAAGAGCAAGATTTTATAGAGGCAACCAAAGAGCCCGGTGTCACTTTCGTTGCAGCCAAGTTTGATGGTATACTTGGCCTTGGGTTTCAAGAAATCTCCGTCGGGGATGCTGTTCCTGTTTGGTACAACATGCTGAAACAAGGTCTTGTTCAGAAACCTGTATTTTCGTTTTGGCTTAATCGCAAGTCTGATGAGGACGAAGGGGGCGAGCTTGTGTTTGGTGGGGTTGATCATAATCATTTCAAGGGTAAACACACATTTGTCCCTGTGACTCAGAAAGGCTATTGGCAGTTTGATATGGGTGATGTCTTGATTGGTGATAACACAACCGGATTTTGCGCCACTGGTTGTGCGGCAATTGCTGATTCTGGAACCTCTTTGGTCGCTGGTCCAACGGGTGTTATTACCCAAATCAATCAAGCCATTGGTGCTGCTGGTGTTGTGAACCAACAATGCAAGACGTTCGTCAATCAATATGGAAAAACTATACTCGAGATGCTACTATACGAGACACAACCTAAAAGAATCTGCTCTGAGATGAAGTTATGCTCCTTTGATAGTTCTCGCGATACTAGCATGATAATTGAGAGTGTCGTCGACAAGAATGATGGAAAATCATCTGGTGTTCATAACGAGATGTGTACTCTCTGCGAGATGGCTGTTGTTTGGATGGAAACCAAAATACAACGAAATGAAAGCGAAGATGATATAATCAACCATGTTGATCAGCTTTGTGAACGGTTGCCGAATCCATTGGGAGAATCTGGAGTTGATTGCAATAGTCTTTCATCCATGCCCAATGTTGCTTTTACCATTGGTGGTAAAACTTTTGAACTCTCACCTGAAGAGTATATCATAAAAGTTGGTGAGGGAGTAGCAGCACAATGCATCAGTGGATTTACTGCACTTGATGTGGCACCTCCTCGTGGGCCCCTGTGGATCCTGGGAGATATATTTATGGGTAAATACCATACGGTGTTCGACTATGGTAAATTACGAGTTGGGTTTGCAGAAGCAGTTTGA | 1545 | 42.27 | MIIQLSNMGTLFKSSLILLFICFFLAPTAYSSPNDGLVRVGLKKRKINQLNQIGHIGSNEGNAGRNYGFRGNFRDSGGDVIALNNFMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTKCYFSAACFLHSKYKSSQSSSYKKNGKSAAIQYGTGSISGFFSQDLITLGDLVVKEQDFIEATKEPGVTFVAAKFDGILGLGFQEISVGDAVPVWYNMLKQGLVQKPVFSFWLNRKSDEDEGGELVFGGVDHNHFKGKHTFVPVTQKGYWQFDMGDVLIGDNTTGFCATGCAAIADSGTSLVAGPTGVITQINQAIGAAGVVNQQCKTFVNQYGKTILEMLLYETQPKRICSEMKLCSFDSSRDTSMIIESVVDKNDGKSSGVHNEMCTLCEMAVVWMETKIQRNESEDDIINHVDQLCERLPNPLGESGVDCNSLSSMPNVAFTIGGKTFELSPEEYIIKVGEGVAAQCISGFTALDVAPPRGPLWILGDIFMGKYHTVFDYGKLRVGFAEAV | 514 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Fra11g02625 | 514 | Pfam | Saposin-like type B, region 1 | 387 | 423 | IPR007856 | GO:0006629(InterPro) | |
| Fra11g02625 | 514 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 106 | 117 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Fra11g02625 | 514 | FunFam | Vacuolar aspartic proteinase | 390 | 513 | - | - | |
| Fra11g02625 | 514 | SUPERFAMILY | Acid proteases | 17 | 513 | IPR021109 | - | |
| Fra11g02625 | 514 | Gene3D | Acid Proteases | 38 | 249 | IPR021109 | - | |
| Fra11g02625 | 514 | Gene3D | - | 321 | 423 | - | - | |
| Fra11g02625 | 514 | ProSiteProfiles | Peptidase family A1 domain profile. | 91 | 511 | IPR033121 | - | |
| Fra11g02625 | 514 | Gene3D | Acid Proteases | 250 | 513 | IPR021109 | - | |
| Fra11g02625 | 514 | SUPERFAMILY | Saposin | 322 | 423 | IPR011001 | - | |
| Fra11g02625 | 514 | CDD | phytepsin | 81 | 512 | IPR033869 | GO:0004190(InterPro) | |
| Fra11g02625 | 514 | ProSiteProfiles | Saposin B type domain profile. | 321 | 361 | IPR008139 | - | |
| Fra11g02625 | 514 | Pfam | Saposin-like type B, region 2 | 324 | 357 | IPR008138 | - | |
| Fra11g02625 | 514 | PANTHER | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED | 17 | 513 | IPR001461 | GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(PANTHER)|GO:0006508(InterPro) | |
| Fra11g02625 | 514 | ProSiteProfiles | Saposin B type domain profile. | 384 | 425 | IPR008139 | - | |
| Fra11g02625 | 514 | Pfam | Eukaryotic aspartyl protease | 90 | 513 | IPR033121 | - | |
| Fra11g02625 | 514 | FunFam | Lysosomal aspartic protease | 77 | 319 | - | - | |
| Fra11g02625 | 514 | PRINTS | Pepsin (A1) aspartic protease family signature | 243 | 256 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Fra11g02625 | 514 | PRINTS | Pepsin (A1) aspartic protease family signature | 293 | 304 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Fra11g02625 | 514 | PRINTS | Pepsin (A1) aspartic protease family signature | 97 | 117 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Fra11g02625 | 514 | PRINTS | Pepsin (A1) aspartic protease family signature | 487 | 502 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Fra11g02625 | 514 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 293 | 304 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Fra11g02625 | K08245 | phytepsin [EC:3.4.23.40] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 89483 | Fra11g02625 | Fra8g01091 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Fra | Fra-Chr11:79762700 | Fra4g00416 | Fra-Chr4:40245949 | dispersed | |
| Fra | Fra-Chr13:25337352 | Fra11g02625 | Fra-Chr11:79762700 | transposed | |
| Fra | Fra-Chr10:2873530 | Fra11g02625 | Fra-Chr11:79762700 | wgd | |
| Fra | Fra-Chr11:79762700 | Fra8g01091 | Fra-Chr8:10738443 | wgd |