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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02654 ATGATACGAGCGGTGATAGTAATCAACGACCAAGGGAAACCTCGCCTTGTCAAATTCTACGAACATCAGCCCGTGGAGAAGCAGCACCAAATCATCCGCAACATATACGGAGTTCTATGCAGTCGAGCTGAGAATGTGAGCAACTTTGTTCAAGATTCAACTCTAGGACCGAATACCCGACTTGTGTACAAGACTTTTGCTACACTATACTTCATTTTCATATTCGATGATTCTGAAAACGAACTTGCTATACTAGATCTTATGCAAGTATTCGTGGAGACGTTGGATAAGTGTTTCAGTAATGTGTGTGAGCTAGATATCGTGTTCAATTTCAACAAGGTACATACTATCCTTGACGAGATTATTTTGGGTGGTCAAGTTGTCGAAATGAGTTCTTCTGAAGTTGTCAAAGCAGTAGACGAGATTTCTCGGCTGGAGAAGAATCAAAATTCAATCGTTAGAGTTTCAAAATCCATATCTGGTTGGCAGGGATGA 495 40.81 MIRAVIVINDQGKPRLVKFYEHQPVEKQHQIIRNIYGVLCSRAENVSNFVQDSTLGPNTRLVYKTFATLYFIFIFDDSENELAILDLMQVFVETLDKCFSNVCELDIVFNFNKVHTILDEIILGGQVVEMSSSEVVKAVDEISRLEKNQNSIVRVSKSISGWQG 164
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02654 164 FunFam AP complex subunit sigma 1 155 - -
Fra11g02654 164 ProSitePatterns Clathrin adaptor complexes small chain signature. 61 71 IPR000804 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Fra11g02654 164 Gene3D - 1 160 - -
Fra11g02654 164 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 143 IPR016635 GO:0015031(InterPro)|GO:0016192(PANTHER)|GO:0043231(PANTHER)
Fra11g02654 164 PIRSF AP-complex-sigma 1 156 IPR016635 GO:0015031(InterPro)
Fra11g02654 164 Pfam Clathrin adaptor complex small chain 1 144 IPR022775 -
Fra11g02654 164 SUPERFAMILY SNARE-like 1 141 IPR011012 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02654 K12399 AP-3 complex subunit sigma
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:79996921 Fra9g01416 Fra-Chr9:20249845 dispersed