AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02714 ATGGAGATCGCACCGGCGCACGACGGTGTCGGAACCCTACCGGAACCTTCATCTGCTTCCACCGTCTCCGTCGATAACACCAATTTGTCGACCAACATGTACGATGACGATAATGAAGAGGATGAGGATGTTTGTCGGATCTGCCGGAATCCAGGAGACGCCGATAATCCTCTCCGGTATCCGTGTGCTTGTAGCGGCAGTATTAAGTTTGTTCACCAGGACTGTCTTCTTCAGTGGCTGAATCACAGCAACGCTCGTCAGTGCGAGGTATGCAAGCACCCCTTTTCATTCTCCCCTGTATATGCTGAAAACGCCCCTGGAAGGCTTCCTTTTCAGGAATTTATCATTGGGATAGCAATGAAAGCTTATATTGTTATGCAGTTCTTCATACGTTTTATATTTGTGCTATCCATATGGCTTTTAATCATACCATTTATCACTTTCTGGATATGGCGATTTTCATTTGTTAGGAGTTTTAATGAAGCCCAAAGACTTTTCTTAAGTCATATTTCAACTACACTCATCCTCACAGATTGTCTTCATGGGTTCCTACTCTCAGCAAGCATTGTGTTTATTTTTCTTGGTGCCACGTCTTTGAGGGATTATTTTCGACATTTAAGAGAACTTGGAGGGCAGGAAGGTGACAGAGAGGAAGAAGTAGATAGAAACGGTGTTCGTGTTGCAAGGAGACAAGGTAACCGGAACCTTGTTGGTGAAGGGAATGGTGAAGATGTTGGTGGGGGCCATGGTGTTGGTGAGGCCCATGGTATTGGTGGGGCCGGTCAGATGATTAGAAGGAATGCAGAAAATGTTGCAGCCAGGTGGGAGATGCAAGCGGCTCGACTCGAGGCACATGTTGAACAGATATTTGATGGTTTGGATGATGGTGATGGTGCAGAGGATGTTCCTTTTGATGAACTGGTTGGTATGCAGGGGCCCATTTTTCATTTGGTGGAAAATGCATTTACTGTTCTTGCAAGCAACATGATATTTCTTGGTGTTGTAGTACTTGTGCCTTTTCACCTAGGACGTTTTATCCTCCATCAGTTATCATTTATTCTATCATCTGCCACGAGCCCTATGTTTTCAACTGTTGTACCCATTACGCAACAAGCGCTTTCATTAGCCAATATTACATTAAAAAATACACTTACTGCAGCCACAAATTTTACAACTGACAAAAATCCAAATGTAAATGATACAGCTCTCGTTTCAGTTAATATTCTAAGAGGAGATTCCCGACTATCTGATGCTGCAACTCTTGCAGTTGGATATATTTTGATTTTCACATTGATTATTCTCTATTTAGGAGTTATAGCACTTGTTAGGTATGCCAGGGGTGAGCCCTTGACCATGGGGAGGTTTTATGGTATTACTTCAATTGCAGAAACAATTCCATCCCTTTTTCGACAGTTCTTAGCTGCAATGAGGCATTTAATGACTATGATAAAGGTCGCTTTTCTATTGGTCATTGAGCTAGGGGTGTTCCCTTTAATGTGTGGATGGTGGTTAGATGTTTGTACTATAAGGATGTTCGGGAAGTCAATCAGTCAAAGAATTGACTTCTTTTCGGTTTCTCCGCTGGCAAGCTCATTGATTCATTGGGCTGTTGGGATTGTCTACATGTTGCAAATATCCATATTTGTTAGTCTTCTTCGAGGGGTTTTGCGGAACGGAGTCCTTTATTTTCTGCGGGATCCAGCTGATCCTAATTACAATCCATTTAGGGATTTAATTGATGATCCTGTGTATAAGCATGCTCGCAGGGTTCTCTTGTCAGTTGCTGTTTATGGGAGCTTAATTGTAATGCTGGTATTTTTGCCTGTTAAACTTGCTATGCGAATGGCTCCTTCTATCTTCCCTCTTGATATATCAGTATCTGACCCATTCACCGAGATTCCTGCTGATATGCTTCTCTTCCAAATTTGCATCCCATTTGCTGTTGAGCATTTTAAGCTGCGGGCAACAATTAAAGCACTTCTGTACTATTGGTTTACTGCAGTTGGGTGGGCCCTCGGTTTAACAGATTACTTATTGCCCAGACCTGAAGACATTGGTGGACAAGAAAATGAGAATGATCCAGCAAGACGAGATAGGATACATGGTCAAATAGGTGGTCAACCTGGGGGTCAACATCAAGCTGTAGCAGGATATTTACCGCCCGATGATTTGAACCGAGCTAATTCTGCAGAAGAAGATGATGGTGATGAGCAATCTGATTCAGAGAGGTATATGTTTGTTCTGTGTATTGTGCTGCTTTTGTTGGTGGCTTGGTTGACATTGCTGATCTTCAATTCTGCTTTAATTGTGGTGCCTGTATCCCTTGGACGAGTGTTATTCAATGCAGTTCCCCTTCTCCCTATCACACATGGCATCAAATGCAATGACATATATTCGTTTGTTATTGGAAGTTATGTCATCTGGATGACACTGGCGGGCATACGGTATTGCATTAATCAAATTAGAACAAGGAGAGCTACTGTGTTACTAGGTCAAATTTGGATATGGTGTTCCATTGTTGTCAAGAGTTCTGTCCTGTTATCAATTTGGATTTTTGTTATCCCGGTGTTGATTGGTCTGTTATTTGAACTTCTGGTTATTGTACCAATGAGGGTGCCTGTGGATGAAAGCCCAGTGTTTCTGTTGTATCAGGATTGGGCTCTTGGACTTGTTTTTCTTAAGATATGGACTCGACTGGTAATGCTGGATCACGTGATGCCTCTTATGGATGACAGCTGGCGAGTGAAATTCGAGAGAGTAAGGGAAGACGGTTTCTCAAGGTTACAAGCCTTTTGGGTCCTACGAGAGATCGTGATCCCCATCATTATTAAACTCCTTACGGCTCTCTGTGTCCCTTACGTGCTAGCCCGTGGAGTGTTTCCTGTATTTGGGTACCCGTTAGTGGTTAATTCAGCTGTCTACAGATTTGCATGGCTAGGGTGCCTTGGTCTGAGTTTGTTGTGTTATTGTGCCAAACGGTTCCATGTGTGGTTCACCAACCTTCACAACTCGATTAGAGATGATCGATATTTGATTGGTCGAAGGCTTCATAACTTTGGGGAAGATGATACACAACATGAGGCTGAGACTGCAAATGTACCTGACCCACGGGACACTGACGTTGGCTTGAGGCATAGACGCAATATTCCAGCCGTGGGTTAA 3162 43.17 MEIAPAHDGVGTLPEPSSASTVSVDNTNLSTNMYDDDNEEDEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYAENAPGRLPFQEFIIGIAMKAYIVMQFFIRFIFVLSIWLLIIPFITFWIWRFSFVRSFNEAQRLFLSHISTTLILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEGDREEEVDRNGVRVARRQGNRNLVGEGNGEDVGGGHGVGEAHGIGGAGQMIRRNAENVAARWEMQAARLEAHVEQIFDGLDDGDGAEDVPFDELVGMQGPIFHLVENAFTVLASNMIFLGVVVLVPFHLGRFILHQLSFILSSATSPMFSTVVPITQQALSLANITLKNTLTAATNFTTDKNPNVNDTALVSVNILRGDSRLSDAATLAVGYILIFTLIILYLGVIALVRYARGEPLTMGRFYGITSIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSISQRIDFFSVSPLASSLIHWAVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVYKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAVEHFKLRATIKALLYYWFTAVGWALGLTDYLLPRPEDIGGQENENDPARRDRIHGQIGGQPGGQHQAVAGYLPPDDLNRANSAEEDDGDEQSDSERYMFVLCIVLLLLVAWLTLLIFNSALIVVPVSLGRVLFNAVPLLPITHGIKCNDIYSFVIGSYVIWMTLAGIRYCINQIRTRRATVLLGQIWIWCSIVVKSSVLLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLVFLKIWTRLVMLDHVMPLMDDSWRVKFERVREDGFSRLQAFWVLREIVIPIIIKLLTALCVPYVLARGVFPVFGYPLVVNSAVYRFAWLGCLGLSLLCYCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDDTQHEAETANVPDPRDTDVGLRHRRNIPAVG 1053
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02714 1053 ProSiteProfiles Zinc finger RING-CH-type profile. 37 98 IPR011016 GO:0008270(InterPro)
Fra11g02714 1053 MobiDBLite consensus disorder prediction 686 700 - -
Fra11g02714 1053 CDD RING-CH-C4HC3-MARCH6 44 93 - -
Fra11g02714 1053 SMART ringv-2 44 92 IPR011016 GO:0008270(InterPro)
Fra11g02714 1053 Pfam RING-variant domain 45 91 IPR011016 GO:0008270(InterPro)
Fra11g02714 1053 MobiDBLite consensus disorder prediction 14 33 - -
Fra11g02714 1053 PANTHER SSM4 PROTEIN 36 1030 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Fra11g02714 1053 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 29 103 IPR013083 -
Fra11g02714 1053 Coils Coil 265 285 - -
Fra11g02714 1053 MobiDBLite consensus disorder prediction 1 37 - -
Fra11g02714 1053 ProSiteProfiles Zinc finger RING-type profile. 45 92 IPR001841 -
Fra11g02714 1053 SUPERFAMILY RING-U-box 39 96 - -
Fra11g02714 1053 MobiDBLite consensus disorder prediction 685 712 - -
Fra11g02714 1053 FunFam Probable E3 ubiquitin ligase SUD1 30 103 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02714 K10661 E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
89513 Fra11g02714 Fra8g01303
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:80679459 Fra2g00449 Fra-Chr2:22150701 dispersed
Fra Fra-Chr11:80679459 Fra14g00307 Fra-Chr14:28838234 wgd
Fra Fra-Chr11:80679459 Fra8g01303 Fra-Chr8:13514214 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fra1g01644 . 68 129 HMGR gene family AT4G34100 37.097 1.38e-08 53.5
Fra1g01924 . 51 632 HMGR gene family AT1G76490 73.729 0.0 870.0
Fra2g00449 . 1 1107 HMGR gene family AT4G34100 73.5 0.0 1600.0
Fra3g00016 ACH,WGDA 68 129 HMGR gene family AT4G34100 41.935 1.79e-10 59.3
Fra3g00375 . 68 129 HMGR gene family AT4G34100 41.935 1.27e-10 60.1
Fra4g01177 . 68 133 HMGR gene family AT4G34100 37.879 4.37e-10 58.2
Fra7g00305 . 51 632 HMGR gene family AT1G76490 74.237 0.0 880.0
Fra7g01408 . 51 632 HMGR gene family AT1G76490 71.524 0.0 858.0
Fra7g01827 ACH,WGDA 40 129 HMGR gene family AT4G34100 30.0 2.79e-09 55.8
Fra7g02530 ACH 68 130 HMGR gene family AT4G34100 41.27 1.01e-10 59.7
Fra7g02842 . 68 130 HMGR gene family AT4G34100 41.27 9.91e-11 59.7
Fra8g00017 . 51 632 HMGR gene family AT1G76490 73.322 0.0 868.0
Fra8g01303 ACH 35 1107 HMGR gene family AT4G34100 73.339 0.0 1573.0
Fra9g00131 ACH,WGDA 68 141 HMGR gene family AT4G34100 33.784 8.24e-10 57.4
Fra9g00657 WGDA 67 161 HMGR gene family AT4G34100 30.303 4.83e-10 60.1
Fra9g01575 . 51 632 HMGR gene family AT1G76490 69.865 0.0 832.0
Fra11g00609 . 68 133 HMGR gene family AT4G34100 35.821 2.62e-11 60.5
Fra11g02714 ACH 67 1104 HMGR gene family AT4G34100 72.095 0.0 1512.0
Fra12g01225 ACH 81 129 HMGR gene family AT4G34100 36.735 2.32e-08 48.9
Fra12g01228 . 81 118 HMGR gene family AT4G34100 39.474 4.43e-07 47.4
Fra13g00712 ACH 68 142 HMGR gene family AT4G34100 37.333 9.65e-11 60.8
Fra14g00307 . 67 1067 HMGR gene family AT4G34100 71.158 0.0 1460.0
Fra15g00612 . 68 129 HMGR gene family AT4G34100 38.71 9.39e-10 57.0
Fra15g01277 . 68 125 HMGR gene family AT4G34100 41.379 4.34e-10 57.8
Fra16g00596 WGDA 68 130 HMGR gene family AT4G34100 41.27 5.08e-10 58.2
Fra18g01737 . 68 148 HMGR gene family AT4G34100 31.707 5.91e-10 57.0