AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02719 ATGGCGAAATTCAAATGCGGATGCAATGTGTTATTCGCAAGCTTCTTCGCCACATTTGTTCTGTTCACGTATGCTTCAGCGCTCAAGGAAGGACAAACGTGCGTGGATAATAGCAATTGTGACGCAGGTTTACACTGTGAGGCTTGTGTTGCAGACGGCAATGTTCGCCCGAGATGTACTCGACTTCAGCCTATTAGTCCCGTTTCTAAGGTGAAAGGATTGCCGTTCAATCGGTACTCGTGGTTAACGACGCATAATTCGTTCGCTAAATTTGGAGAGAAGTCGGCCACCGGTTCCGTCGTTCTAGCTCCGACGAACCAGCAGGATTCTGTTAGTTCGCAGCTCGATAACGGTGTGAGAGGGCTGATGCTTGATATGTATGACTTTGAGAATGACATTTGGTTATGTCATTCATTTGGTGGCAAATGCTTCAACTACACAGCTTTTCAACCTGCTATCAATGTTCTGAAAGAGATTCGATTTTTCCTAGAAAAGAATCCAACGGAAATTGTAACCCTATTCATTGAAGATTATGTTACCTCACCAAAGGGTCTAACCAATGTCTTCAATGCTGCTGGCCTGAGGAAATACTGGTTTCCCGCAGCCCAAATGCCGAGTGATGGTAGGGACTGGCCCACAGTTGACTCAATGGTTCGCCAAAATTACCGTTTGGTAGTTTTCACTTCCAAATCTTCTAAACAGGCTACTGAAGGGATTGCCTATGAGTGGAAGTACTTGGTTGAAAACCAATATGGAACAGATGGGATGAAAAGTGGTTTATGCCCGAACCGTGCTGAATCAGCAGCAATGAACACTACATCAAGATCACTTGTTTTAATGAACTATTTCCCAGATACGCCTGATATTACCCAAGCTTGCAAGCACAATTCTGGCCCATTAATAAGCATGATGAACACATGCCATGATGTCGCTGGTAAACGGTGGCCTAATTTCATTGCTGTTGACTTCTACAAGAGGAGTGATGGTGGGGGTGCACCAGCAGCTGTAGATATGGCTAACGGTCAGCTGGTTTGTGGTTGTAACACCATTGCAGCATGCAAGCCAAACATGACCTTTGGAGCTTGTAACCTCCCAGAGGCTGGGGCTGCTCCAACTCCAATTTCAGCATTAAAAACCTCGGGGAACATCGGTGGTCGACCGGGTCATCTTGGATGGTTGTTTGGGTCAGGTTTGATTGCTATAACCTTGTGTTTTTAA 1218 45.48 MAKFKCGCNVLFASFFATFVLFTYASALKEGQTCVDNSNCDAGLHCEACVADGNVRPRCTRLQPISPVSKVKGLPFNRYSWLTTHNSFAKFGEKSATGSVVLAPTNQQDSVSSQLDNGVRGLMLDMYDFENDIWLCHSFGGKCFNYTAFQPAINVLKEIRFFLEKNPTEIVTLFIEDYVTSPKGLTNVFNAAGLRKYWFPAAQMPSDGRDWPTVDSMVRQNYRLVVFTSKSSKQATEGIAYEWKYLVENQYGTDGMKSGLCPNRAESAAMNTTSRSLVLMNYFPDTPDITQACKHNSGPLISMMNTCHDVAGKRWPNFIAVDFYKRSDGGGAPAAVDMANGQLVCGCNTIAACKPNMTFGACNLPEAGAAPTPISALKTSGNIGGRPGHLGWLFGSGLIAITLCF 405
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02719 405 CDD PI-PLCc-At5g67130-like 73 340 - -
Fra11g02719 405 Gene3D Phosphatidylinositol (PI) phosphodiesterase 66 330 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Fra11g02719 405 SUPERFAMILY PLC-like phosphodiesterases 73 344 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Fra11g02719 405 PANTHER UNCHARACTERIZED 38 354 IPR051057 GO:0008081(PANTHER)
Fra11g02719 405 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 75 183 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02719 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:80734492 Fra5g00676 Fra-Chr5:7715309 dispersed
Fra Fra-Chr7:80858706 Fra11g02719 Fra-Chr11:80734492 transposed
Fra Fra-Chr11:80734492 Fra7g02414 Fra-Chr7:82033319 wgd