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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra11g02724 ATGAGTTCATTTATCAACTTCAAGAACTATGGTGATACATCACAACCAGAGCTCAATTGCAGCAAACAAATGGTGGCGAATTCACCGTTGACCCGACAATCTTCCATCTACTCGTTGACTTTCGACGAATTGCAAAGCACTTTAGGTGGTAGTGGGAAAGATTTTGGATCAATGAACATGGATGAACTTTTGAAGAACATTTGGAGTGCTGAAGAAACTCAAGCAATCGCATCGACTTCGAGCTTAGGGATCGATGGAAATGCCCCGAATAATGGGAACATTCAAAGACAAGGGTCTTTGACTTTACCAAGAACACTTAGCAGAAAAACAGTTGATGAAGTTTGGCGGGAATTGCTTGTAAGTAGTAGTAACAATGGAGTCAAAGATGGGGACTTGATTGGTCAAACGAATTTACAACAACAAGAAAGAGAACCAACATTAGGTGAGATGACACTTGAGGATTTCTTGCTGAAAGCAGGGGTAGTAAAGGAAGATCACCAAATTCAAACGAACCCGCGACCCGTTATACCTCAAAACGGGTCGTTTTTCGGGGATGTTTCACAACCGAATGTCGAAAACAGTAGTTTCATATTCGGGTTTCAAAACCCGAATCAGAATAACGGGTTTAATGGGCCAACGGTTAGCCGAATCACCGAGGCTAAAACAGGTGTGACCCTGCACCCAAAACCACAGCCACAACCACAGCCCCAGCCCCAGCCCATTTTCCCCAAACAAGCTGCTTTGGACTTCACGGCACCGTTGACCGGTCAACTGGCTAGCCCGGGGGCTAAAATGGGGAAGTTTGAGCAACCGGTGGTTAAGACTAGTGTGGTTCAAGCTAGTGACATAGAGAATGGAGTGATGAACATGAAAACACTTGGGGGTGTTTCGGTTAACTCTCCACGGAATTTGATCCCGAAAAGTAATTTGGATTCAACTCCATCACCCCCGTTTTATGCGTTTGGTGAAGGCGATCTACGTGGCCCGAAACGCAGTGGGACTTTAGAGAAAGTGGTGGAGAGAAGGCGGAGAAGGATGATCAAGAACAGAGAGTCAGCTGCACGATCTCGTGCCCGAAAGCAGGCGTATACTTTGGAATTGGAAGCCGAAGTTGCAAAACTTAAAGAAATTAACCACGAGTTGCTTAAAAAACAGGCAAAGATCATGGAGATGCAGAATAATCAGGTAGTGGAGAAGTTGAAACGGCCTTGGGGAAGCAAAAGATTATGCTTGAGAAGAACATTGACTGGACCTTGGACCAGATTAGCAAGCACATGA 1278 45.15 MSSFINFKNYGDTSQPELNCSKQMVANSPLTRQSSIYSLTFDELQSTLGGSGKDFGSMNMDELLKNIWSAEETQAIASTSSLGIDGNAPNNGNIQRQGSLTLPRTLSRKTVDEVWRELLVSSSNNGVKDGDLIGQTNLQQQEREPTLGEMTLEDFLLKAGVVKEDHQIQTNPRPVIPQNGSFFGDVSQPNVENSSFIFGFQNPNQNNGFNGPTVSRITEAKTGVTLHPKPQPQPQPQPQPIFPKQAALDFTAPLTGQLASPGAKMGKFEQPVVKTSVVQASDIENGVMNMKTLGGVSVNSPRNLIPKSNLDSTPSPPFYAFGEGDLRGPKRSGTLEKVVERRRRRMIKNRESAARSRARKQAYTLELEAEVAKLKEINHELLKKQAKIMEMQNNQVVEKLKRPWGSKRLCLRRTLTGPWTRLAST 425
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra11g02724 425 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 339 396 - -
Fra11g02724 425 Coils Coil 360 394 - -
Fra11g02724 425 SMART brlzneu 337 402 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Fra11g02724 425 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 344 359 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Fra11g02724 425 SUPERFAMILY Leucine zipper domain 341 390 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Fra11g02724 425 CDD bZIP-plant-BZIP46 346 392 - -
Fra11g02724 425 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 32 417 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Fra11g02724 425 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 339 390 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Fra11g02724 425 Gene3D - 339 401 - -
Fra11g02724 425 Pfam bZIP transcription factor 341 391 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra11g02724 K14432 ABA responsive element binding factor
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:80767164 Fra2g00756 Fra-Chr2:57157742 dispersed
Fra Fra-Chr11:80767164 Fra17g01357 Fra-Chr17:34553853 wgd
Fra Fra-Chr11:80767164 Fra7g02745 Fra-Chr7:85175313 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fra1g00009 ACH,WGDA 6 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 52.144 7.39e-118 348.0
Fra1g00070 WGDA 24 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 49.645 5.42e-38 125.0
Fra1g01207 ACH 1 365 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 52.865 1.17e-107 317.0
Fra2g00019 . 211 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 55.556 4.77e-24 99.4
Fra2g00756 ACH 1 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 39.48 7.84e-72 228.0
Fra2g00923 ACH,WGDA 121 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 29.577 7.51e-18 80.1
Fra2g00942 ACH 1 292 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G42380 43.492 1.98e-72 223.0
Fra2g01215 WGDA 44 277 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 47.826 6.74e-62 197.0
Fra2g01249 . 1 376 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 58.421 9.89e-132 380.0
Fra3g00367 . 245 443 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 27.803 2.21e-19 84.7
Fra3g00798 WGDA 1 153 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 73.203 2.95e-61 185.0
Fra3g00990 WGDA 1 481 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 59.496 0.0 579.0
Fra4g00077 . 23 720 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40950 47.721 2.46e-165 490.0
Fra4g00251 . 1 258 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 60.662 2.93e-108 312.0
Fra4g01010 WGDA 53 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 66.379 1.20e-44 145.0
Fra5g00349 . 213 318 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 37.383 4.50e-15 72.8
Fra5g00728 ACH,WGDA 122 213 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G22850 46.739 2.22e-21 85.9
Fra5g00775 ACH 1 154 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 48.387 4.88e-33 116.0
Fra5g00776 ACH 219 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 67.857 1.32e-30 109.0
Fra5g01148 . 27 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 69.301 9.11e-151 432.0
Fra5g01337 . 217 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 56.522 8.27e-16 71.2
Fra6g01115 ACH 9 166 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 51.22 4.87e-44 142.0
Fra7g00435 . 217 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 55.072 1.89e-13 63.9
Fra7g00504 . 1 553 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 55.719 0.0 535.0
Fra7g00526 . 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 54.124 1.04e-113 333.0
Fra7g01751 ACH 21 165 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 52.632 4.27e-40 133.0
Fra7g01915 WGDA 2 245 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 52.091 9.77e-82 243.0
Fra7g01938 . 38 517 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 49.312 7.42e-127 379.0
Fra7g01982 . 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 38.926 5.66e-69 220.0
Fra7g02060 WGDA 62 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 41.048 6.03e-36 127.0
Fra7g02331 ACH,WGDA 28 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 56.643 1.49e-44 144.0
Fra7g02477 ACH,WGDA 62 156 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G13600 42.718 1.22e-15 69.7
Fra7g02571 ACH,WGDA 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 53.509 9.04e-107 313.0
Fra7g02745 ACH 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 52.323 4.82e-110 327.0
Fra7g02789 ACH 62 156 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G13600 43.689 5.36e-16 70.9
Fra7g02880 ACH 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 53.801 2.98e-107 315.0
Fra7g02940 WGDA 9 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 47.531 1.03e-38 127.0
Fra8g00639 WGDA 62 276 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 46.288 4.04e-53 174.0
Fra8g00659 . 62 276 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 48.261 2.41e-54 177.0
Fra8g01119 ACH 7 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 49.08 7.87e-44 141.0
Fra8g01493 . 42 273 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G42380 32.103 4.92e-18 82.0
Fra9g00032 . 1 452 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G68640 58.65 4.07e-164 469.0
Fra9g00227 WGDA 1 246 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 52.672 2.78e-83 247.0
Fra9g01155 ACH 1 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 53.846 3.80e-47 150.0
Fra9g01259 ACH 5 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 38.411 4.94e-22 85.1
Fra9g01366 . 16 160 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G18160 35.862 9.47e-23 87.0
Fra9g02206 . 121 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 26.271 3.35e-17 78.6
Fra10g00102 . 17 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 50.0 3.16e-40 131.0
Fra10g00516 . 62 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 70.755 4.19e-47 150.0
Fra10g01105 . 6 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 52.252 4.32e-98 290.0
Fra10g01205 . 1 397 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 56.65 1.62e-137 396.0
Fra10g01448 ACH,WGDA 1 382 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 48.537 2.18e-106 316.0
Fra10g01599 WGDA 1 143 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 57.241 1.36e-53 164.0
Fra11g00283 ACH,WGDA 1 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 49.02 8.86e-107 317.0
Fra11g00521 . 114 318 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 24.658 8.80e-14 67.4
Fra11g00605 WGDA 1 143 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 53.103 4.02e-51 158.0
Fra11g02122 . 146 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G44080 45.128 6.30e-34 122.0
Fra11g02476 ACH 1 321 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 54.434 5.67e-102 300.0
Fra11g02497 ACH 112 309 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 25.225 1.72e-16 75.1
Fra11g02667 ACH 41 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 44.094 1.34e-30 107.0
Fra11g02724 . 1 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 47.856 1.14e-100 303.0
Fra12g00056 WGDA 101 213 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G22850 38.938 3.96e-22 87.0
Fra12g00300 ACH 28 349 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 56.609 1.11e-107 318.0
Fra12g01191 WGDA 101 213 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G22850 38.938 4.94e-22 86.7
Fra12g01956 ACH 21 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 67.568 2.57e-150 431.0
Fra12g02325 . 155 287 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G42990 49.296 3.95e-19 82.8
Fra13g00158 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 75.227 9.13e-178 493.0
Fra13g00196 . 1 328 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 49.143 1.12e-91 273.0
Fra13g00430 ACH 12 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 45.178 4.18e-92 279.0
Fra13g00480 . 95 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 58.571 1.06e-18 77.8
Fra13g00583 ACH,WGDA 53 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 64.423 2.57e-39 129.0
Fra13g01645 . 5 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 51.623 8.31e-85 255.0
Fra14g01272 . 23 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 53.103 8.18e-40 132.0
Fra15g00445 ACH,WGDA 8 163 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 50.296 1.06e-43 140.0
Fra15g00581 ACH,WGDA 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 54.599 8.03e-108 316.0
Fra15g00647 ACH,WGDA 181 304 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G37730 41.732 8.43e-17 73.9
Fra15g00742 ACH,WGDA 49 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 57.944 4.48e-35 119.0
Fra15g00861 WGDA 63 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 41.778 4.69e-34 120.0
Fra15g00884 . 69 270 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G03970 53.171 3.90e-57 182.0
Fra16g00959 . 14 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 47.647 8.02e-82 250.0
Fra16g01092 WGDA 1 481 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 61.39 0.0 592.0
Fra16g01605 WGDA 1 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 67.925 5.02e-53 164.0
Fra17g00261 . 15 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 52.698 6.20e-88 263.0
Fra17g00368 . 23 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 56.502 5.23e-165 473.0
Fra17g00506 . 1 440 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G36270 47.146 5.61e-99 301.0
Fra17g01357 ACH,WGDA 21 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 52.235 4.29e-111 331.0
Fra17g01480 ACH,WGDA 37 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 46.259 1.80e-34 117.0
Fra18g00304 . 120 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 27.386 2.38e-20 87.0
Fra18g00310 . 121 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 29.583 3.86e-21 89.0
Fra18g00360 ACH 24 339 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 57.143 1.15e-117 346.0
Fra18g00897 . 37 124 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 38.202 9.17e-17 69.7
Fra18g00898 . 22 144 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 35.659 2.82e-17 71.6
Fra18g01424 . 15 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 33.758 2.60e-14 67.4
Fra10000115.1g00003 . 109 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 32.768 1.63e-16 72.4
Fra10000152.1g00002 . 109 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 32.768 1.63e-16 72.4
Fra10000159.1g00004 . 23 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 43.072 1.46e-66 209.0
Fra10000206.1g00004 . 23 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 44.411 2.83e-68 214.0
Fra10000270.1g00005 . 36 372 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 60.117 3.73e-128 372.0
Fra10000271.1g00001 . 121 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 28.814 1.04e-19 84.7
Fra10000319.1g00004 . 6 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 63.444 4.23e-145 414.0
Fra10000365.1g00007 . 91 515 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G10800 41.364 1.79e-77 254.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fra bZIP_1 2.2e-11 CL0018 TF bZIP