Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Fra11g02764	ATGGGAAATGCGATTCAAAAACCCCATCAAGATTCACACCCAGATCAAGAACTTGAAGATCAAGAATCATCATCATCGACATTTACATGTGAGATTTGCATCGAACCCGTGACACTTCCGAACAGGAAGTTCAAGAACAGTAATAAATGCGTTCACCCCTTTTGCACCGATTGTATGATAAAGTACATACAGGTGAAGCTGGAAGACAACGTGTCTGATATCAAATGCCCTGCTGTCACCTGCGATTACTCTCTTGAGCCCCTTTCGTGTCGCCCGAAAATCGCACACCAACTGTTTGATAAATGGTGTGATGTGTTGTGTGAGTCTGCTGTGTTGGGGCTTGATCGGGTTTATTGCCCGTATCGCGATTGTTCAGCTTTGGTGATCAATGAGTGTGGTGGTGGTGGTAATTTAAGGAGGTGTGTGTGTCCCAATTGCAAGAAGCCGTTTTGTTTTCGGTGTAAGGTTCCGTGGCATGCTGGTTATAGGTGTGAGGAGAGTGGGGAGACGAGGGATCAAAACGATATCGCGTTTGGTATTCTTTCTGAGAGGAAGCAGTGGATGAGGTGCCCCATGTGTAGGCATTGTGTTGAGCTTGTTAAAGGTTGCGCCATTGTTCGATGCAGATGTGGAATTGAATTTTGCTACAAATGTGGTAAAAAGGTGGATCACCATTGGTGCAATTGTCGAAGATCTTCTACAATCTGCATGTGGATTTTTCATCTTTGCATAGTGATTCTGGTTATATGGCCATTCTTTCTTCTATTTACAGCTATCACAAGAAACAACCAACACAAATAA	801	43.7	MGNAIQKPHQDSHPDQELEDQESSSSTFTCEICIEPVTLPNRKFKNSNKCVHPFCTDCMIKYIQVKLEDNVSDIKCPAVTCDYSLEPLSCRPKIAHQLFDKWCDVLCESAVLGLDRVYCPYRDCSALVINECGGGGNLRRCVCPNCKKPFCFRCKVPWHAGYRCEESGETRDQNDIAFGILSERKQWMRCPMCRHCVELVKGCAIVRCRCGIEFCYKCGKKVDHHWCNCRRSSTICMWIFHLCIVILVIWPFFLLFTAITRNNQHK	266

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Fra11g02764	266	Gene3D	-	174	236	-	-
	Fra11g02764	266	SUPERFAMILY	RING-U-box	24	109	-	-
	Fra11g02764	266	FunFam	RBR-type E3 ubiquitin transferase	25	113	-	-
	Fra11g02764	266	SUPERFAMILY	RING-U-box	173	231	-	-
	Fra11g02764	266	SUPERFAMILY	RING-U-box	109	166	-	-
	Fra11g02764	266	SMART	ibrneu5	100	164	IPR002867	GO:0008270(InterPro)
	Fra11g02764	266	MobiDBLite	consensus disorder prediction	1	23	-	-
	Fra11g02764	266	Pfam	IBR domain, a half RING-finger domain	115	164	IPR002867	GO:0008270(InterPro)
	Fra11g02764	266	ProSiteProfiles	Zinc finger RING-type profile.	30	77	IPR001841	-
	Fra11g02764	266	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	17	233	IPR031127	GO:0000151(PANTHER)\|GO:0000209(PANTHER)\|GO:0004842(InterPro)\|GO:0005737(PANTHER)\|GO:0006511(PANTHER)\|GO:0016567(InterPro)\|GO:0031624(PANTHER)\|GO:0032436(PANTHER)\|GO:0061630(PANTHER)
	Fra11g02764	266	ProSitePatterns	Zinc finger RING-type signature.	50	59	IPR017907	-
	Fra11g02764	266	Gene3D	Zinc-RING finger domain, C3HC4 (zinc finger)	23	112	IPR013083	-
	Fra11g02764	266	ProSiteProfiles	TRIAD supradomain profile.	26	233	IPR044066	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Fra11g02764	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Fra	Fra-Chr10:2230513	Fra11g02764	Fra-Chr11:81130502	dispersed
	Fra	Fra-Chr11:81130502	Fra6g00022	Fra-Chr6:605446	dispersed
	Fra	Fra-Chr11:80255924	Fra11g02764	Fra-Chr11:81130502	wgd

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Fra1g00290	.	14	524	ARIADNE family	AT4G34370	57.505	0.0	602.0
	Fra2g00742	.	428	548	ARIADNE family	AT4G34370	61.789	3.47e-46	155.0
	Fra2g00743	.	13	384	ARIADNE family	AT4G34370	70.241	0.0	556.0
	Fra7g01529	.	110	309	ARIADNE family	AT3G27710	30.476	2.14e-15	79.7
	Fra7g02445	.	7	527	ARIADNE family	AT1G65430	55.367	0.0	598.0
	Fra8g01154	.	2	597	ARIADNE family	AT4G34370	68.614	0.0	855.0
	Fra11g02764	.	114	321	ARIADNE family	AT3G27710	26.364	3.96e-11	61.2
	Fra12g02170	.	114	317	ARIADNE family	AT3G27710	30.583	2.19e-18	83.6
	Fra16g00435	.	14	524	ARIADNE family	AT4G34370	57.31	0.0	602.0
	Fra18g00520	WGDA	4	567	ARIADNE family	AT1G65430	69.11	0.0	816.0