AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra13g01398 ATGCTCAATATCTTCAACAAAAACCTCCGGCGACTCTGCTCAAAGCTCCGGTGGCCGGTGCGCCGCCGTGCAAAGCCCAAAGTCATCATCAAAAGGTTCGGAAAGTCAAACTCTAGAGGTCAAGATTCATCAATCACAAATGGGTCAGCGACAATTCACCCAAATAATCACTTGGGTGTTTCGAAATCTGAAAACCCAATTCGAATTGCAACGTTTAATGCTGCTTTATTCTCCATGGCACCAGCAGTTCCAGAGTTGACTAAAAAAGGCTCAAGCTTTGACTATGGCGAAGATGATAAAGATTACACCAAGGTAACCTCTGATTCTTCAGTTTCTTACGGTAATTCGAGATCAAAATCAATGGTTGATCGACCCAAAAGTATATTGAAACAATCACCATTGCATTCAAGCTCCATTGGTAGCTCAGAAACTCAATCAAAACAGCAGAAATTTGCAAAGTCAAAGCTGAGAGTGTCTATTAACTTACCTGATAATGAGATCTCATTGAGGCGAAGTGGGCAATTGAGCTTTGTTTTAGATGAAAACGAAACTGACCCGAGTTCGAAAACTAGTAGTTCTAAGGGTATAAGCAAGATTTTGAAAGGAAAGGGTGTTTTGAGATCACAAAACAGTTTTTCTTCAAGAGAAGTTGAAAGTCAAAGGGGAAGTTATCGGTCAACGAAGACTGTTCTTGAGGTTTTGAGAGAATTGGATGCAGATATACTGGCTTTACAGGATGTAAAAGCTGAAGAAGAAAAAGATATGAAGCCATTATCTGATCTTGCTGCTGCTTTGGGTATGAATTATGTTTTTGCAGAGAGTTGGGCACCTGAATATGGTAATGCAGTGCTATCGAAATGGCCGATTAAACGATCCAAGGTTCAGAAGATTTTCGATGATTCTGATTTCAGGAATGTTTTAAAGGCGACAATTGATGTTCCACAAACCGGAGAAGTTGATTTTCATTGCACCCTTCTTGATCATCTTGACGAGAATTGGCGAATGAAACAGATAAATGCAATAATTGAATCTAATGACAGACCACACATCTTAGCTGGAGGCATCAACTCTCTTGATGAAACAGACTACTCGCCCGAAAGATGGACCGACATTGTTAAGTACTATGAAGAAATGGGAAAACCGACACCAAAAGTTGAAGTGATGAAGTACTTAAAGGACAAACAGTACAGCGACGCTAAGGATTGTGCAGGCGAATGCGAATCTGTGGTCATTATCGCTAAAGGCCAAAATGTGCAGGGTACTTGCAAATACGGTACAAGGGTAGATTACATATTGGTGTCCCCTGATTCTCCCTACAAGTTTGTTCCTGGTTCATATATGGTTCTATCATCAAAGGGTACTTCTGACCATCATATAGTCAAAGTTGATGTAACTAAGGTAGATGAATCCGGTCAACAACCGTACGTTAGGAGGCCGCAACGACACCCTAAACAAAAAGTTGTGAAGATTATGAATTCTAATTCATCAAAAGGGGTATGGAAAATGCAAACTTTAGACAGATAG 1524 40.35 MLNIFNKNLRRLCSKLRWPVRRRAKPKVIIKRFGKSNSRGQDSSITNGSATIHPNNHLGVSKSENPIRIATFNAALFSMAPAVPELTKKGSSFDYGEDDKDYTKVTSDSSVSYGNSRSKSMVDRPKSILKQSPLHSSSIGSSETQSKQQKFAKSKLRVSINLPDNEISLRRSGQLSFVLDENETDPSSKTSSSKGISKILKGKGVLRSQNSFSSREVESQRGSYRSTKTVLEVLRELDADILALQDVKAEEEKDMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRSKVQKIFDDSDFRNVLKATIDVPQTGEVDFHCTLLDHLDENWRMKQINAIIESNDRPHILAGGINSLDETDYSPERWTDIVKYYEEMGKPTPKVEVMKYLKDKQYSDAKDCAGECESVVIIAKGQNVQGTCKYGTRVDYILVSPDSPYKFVPGSYMVLSSKGTSDHHIVKVDVTKVDESGQQPYVRRPQRHPKQKVVKIMNSNSSKGVWKMQTLDR 507
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra13g01398 507 MobiDBLite consensus disorder prediction 104 155 - -
Fra13g01398 507 MobiDBLite consensus disorder prediction 130 155 - -
Fra13g01398 507 Gene3D Endonuclease-exonuclease-phosphatase 210 466 IPR036691 -
Fra13g01398 507 SUPERFAMILY DNase I-like 227 464 IPR036691 -
Fra13g01398 507 MobiDBLite consensus disorder prediction 35 59 - -
Fra13g01398 507 Coils Coil 234 254 - -
Fra13g01398 507 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 15 463 IPR051916 GO:0005783(PANTHER)|GO:0006506(PANTHER)
Fra13g01398 507 MobiDBLite consensus disorder prediction 36 59 - -
Fra13g01398 507 Pfam Endonuclease-Exonuclease-phosphatase family 222 457 IPR005135 GO:0003824(InterPro)
Fra13g01398 507 MobiDBLite consensus disorder prediction 106 122 - -
Fra13g01398 507 FunFam Endonuclease-exonuclease-phosphatase family protein 214 467 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra13g01398 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
393626 Fra13g01398 Fra18g01510
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr13:42246438 Fra8g00701 Fra-Chr8:6230131 dispersed
Fra Fra-Chr13:42246438 Fra18g01510 Fra-Chr18:59935283 wgd