AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra13g01408 ATGGCGACTCCTGATGTCTTTCTGCAGGGCGAACACGATCCTTTCTCATCGTCATCTCAATTTGATCACACCAAAGGTGATGCTAAATCGAGAGGATTTGAGCTCGAGAAGAAAATTGAATATCTTGAGAGCTTGAACGATAAGGTTAGTAACAGACGAGCACGTAGATGGATCAATGATCGTATACTGTTGGAGCTTGTACCTCGTTTGACTGGGGATGAAATTAGAGGGTTGTTTGCTCCACCACCTTGGGGTGATGAGCCACAACCGTCACCATTTTGCATGACTAATGTGGGGGAGTGGGACAAATTTAGGAGTATAGACATGGATAAAGAGGCTGGTGCAATAGCGGCTCTTAAAGGTTCCTCATCAAAGAAGAAAAGTAGTGTGGATGCTGATAAGATGGCTGCGTTGACTGCATGGCACAGGGTTGACTGCAGAACTAGAGATGCATTTCGTCGCAGCTTCCTTCCAGAACTTGTTAACGGTTTTGAGGAGAACATCCGGGCCTTTGTCTCAGAGGCAGCTAATGAGGAGGTTCTTGTGATGTATGCCCAAGATCCTTTCCATAGGCTGTTACTTCATGGTGTTTGTGAGTTTTACAATTTGGTGTCTACGACGGAGTCTGAGACCAAAGGTACAAAGGTCTTGAAGATGACCAAAATCAAGAAGAAAAAGTCAGGCAACAACGAGCTCCCGACCATCACCCTTTGCGAGTTCCTGAAAATGGCAAAAGATGGTTTTTGGTAG 750 45.33 MATPDVFLQGEHDPFSSSSQFDHTKGDAKSRGFELEKKIEYLESLNDKVSNRRARRWINDRILLELVPRLTGDEIRGLFAPPPWGDEPQPSPFCMTNVGEWDKFRSIDMDKEAGAIAALKGSSSKKKSSVDADKMAALTAWHRVDCRTRDAFRRSFLPELVNGFEENIRAFVSEAANEEVLVMYAQDPFHRLLLHGVCEFYNLVSTTESETKGTKVLKMTKIKKKKSGNNELPTITLCEFLKMAKDGFW 249
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra13g01408 249 Pfam R3H-associated N-terminal domain 35 154 IPR025952 -
Fra13g01408 249 ProSiteProfiles R3H domain profile. 158 226 IPR001374 GO:0003676(InterPro)
Fra13g01408 249 Gene3D - 155 246 IPR036867 GO:0003676(InterPro)
Fra13g01408 249 PANTHER R3H DOMAIN-CONTAINING PROTEIN 4 11 247 IPR039629 -
Fra13g01408 249 MobiDBLite consensus disorder prediction 1 29 - -
Fra13g01408 249 SUPERFAMILY R3H domain 141 220 IPR036867 GO:0003676(InterPro)
Fra13g01408 249 CDD R3H 164 215 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra13g01408 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
393634 Fra13g01408 Fra18g01490
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr13:42362864 Fra18g01490 Fra-Chr18:59605722 wgd