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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01438 ATGGAAGAACAGGTGGGAAGGGCATTTGTGGAACACTATTATCATTTATTTGATACAGATAGATCATCTCTTGCTACACTTTATCATCAATCTTCCATGTTGACTTTTGAAGGTCAAAAGCTACAAGGTGTTGATGCTATATGTTCCAAGATCAATCAATTACCTTTTGACAAATGCCAACATCTCATTAGCACCATTGACGCGCAACCATCGTCGTTTGTTGGAGGTATCGTGGTGTTTGTTAGTGGAAGCCTTCGACTCAACTGCGAAGAACACCCTCTTCGGTTTAGCCAGATGTTTCACTTGATTCCCACGCCACAAGGAAGCTTCTATGTGCAAAATGACATTTTTCGTCTCAATTACGGTTAA 369 40.65 MEEQVGRAFVEHYYHLFDTDRSSLATLYHQSSMLTFEGQKLQGVDAICSKINQLPFDKCQHLISTIDAQPSSFVGGIVVFVSGSLRLNCEEHPLRFSQMFHLIPTPQGSFYVQNDIFRLNYG 122
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01438 122 CDD NTF2 3 121 IPR018222 -
Fra18g01438 122 FunFam Nuclear transport factor 2 1 122 - -
Fra18g01438 122 Pfam Nuclear transport factor 2 (NTF2) domain 5 119 IPR002075 -
Fra18g01438 122 PANTHER NUCLEAR TRANSPORT FACTOR 2 3 121 IPR045875 GO:0006913(InterPro)|GO:0006913(PANTHER)|GO:0044613(PANTHER)
Fra18g01438 122 Gene3D - 2 122 - -
Fra18g01438 122 ProSiteProfiles Nuclear transport factor 2 domain profile. 5 119 IPR018222 -
Fra18g01438 122 SUPERFAMILY NTF2-like 3 120 IPR032710 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01438 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr18:56909024 Fra9g00476 Fra-Chr9:4022398 dispersed
Fra Fra-Chr18:56909024 Fra7g02098 Fra-Chr7:78588947 transposed
Fra Fra-Chr18:56909024 Fra7g01722 Fra-Chr7:74577277 transposed