AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01489 ATGGCGAAAAAGCTCGTGAAATACGCCGTTGTGGATGCATTTACAGATACTCCGTTTAAAGGAAATCCGGCGGCCGTGTGTTGGTTAGACGACATCGAGAAAGATGAAAAGTGGTTGCAATCAGTTGCAACTGAATTCAACATCTCTGAGACTTGTTATCTGACTCCGATTGCCGAAAACGGTTCGGAAAACCCTAGATTCAGTCTCAGATGGTTCACTCCTGTAGCTGAGGTGGAGCTTTGTGGTCATGCAACTTTAGCAGCTTCCCACTTCCTTTTTCAGTCTGGATTGGTGAATTCTGACATGATTGAATACTCAACCCTTTCTGGAATTTTGACTGCCAAAAGGATTCCTGCTAGCAAGATCAATGGCTCATCGAATGGTGAATCACAAGACGGCTTCTACATAGAATTGGATTTCCCTGTTGTGCCTGTTTTTGATTACAATGATCTTGAGGTTTCTGCAATTTCGGAGATATTAAATGGTGTTTCTATTGTTGATGTAAAGAAGAACACACTTAATGATATATATGTGGTGCTTCCATCAGCACAAGACGTTGCAGAATTCAAGCCTCAAATCAATAAGATTAAAGAAGCCCCAGACAGAGGGATAGTGATCACAGCACGTGCACCAAACAGTTCAGGGTTCGACTTTTATAGTCGCTTCTTCTGCCCAAAACTGGGAATTGATGAGGATCCTGTTTGTGGTAGTGCACATTGCGCCTTAGCAGCTTATTGGCATGACAAGTTGGGGAAATGTGATTTTGTTGCATATCAGGCATCACCTAGAAGCGGCGTATTACATGTCCATCTCGATAAGGAGAATCAAAGAGTACTGCTTCGAGGTAAAGCCACCACAGTCATGGAAGGATCTCTTTTGGTATAA 885 42.82 MAKKLVKYAVVDAFTDTPFKGNPAAVCWLDDIEKDEKWLQSVATEFNISETCYLTPIAENGSENPRFSLRWFTPVAEVELCGHATLAASHFLFQSGLVNSDMIEYSTLSGILTAKRIPASKINGSSNGESQDGFYIELDFPVVPVFDYNDLEVSAISEILNGVSIVDVKKNTLNDIYVVLPSAQDVAEFKPQINKIKEAPDRGIVITARAPNSSGFDFYSRFFCPKLGIDEDPVCGSAHCALAAYWHDKLGKCDFVAYQASPRSGVLHVHLDKENQRVLLRGKATTVMEGSLLV 294
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01489 294 PIRSF Ismrse-PhzF 4 294 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Fra18g01489 294 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 10 290 - -
Fra18g01489 294 Pfam Phenazine biosynthesis-like protein 11 290 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Fra18g01489 294 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 6 294 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Fra18g01489 294 NCBIfam PhzF family phenazine biosynthesis isomerase 8 292 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Fra18g01489 294 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 142 282 - -
Fra18g01489 294 SUPERFAMILY Diaminopimelate epimerase-like 7 293 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01489 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr17:50975732 Fra18g01489 Fra-Chr18:59581310 dispersed