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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01495 ATGGGTTCAGCTCCATCTGTTCCTCAAAATTCAATTCACGAGTTCACTGTCAAGGATTGCAAAGGGAAGGATGTAGATCTCAGCATCTACAAGGGCAAAGTGCTTCTGGTTGTTAATGTTGCTTCCAAATGTGGGTTTACTAACTCTAATTACCCAAAATTGGCTGAGCTTTACAAAAGGTATAAAGATAAAGGTCTCGAGATCTTGGCATTTCCATGCAACCAGTTCTTGTCCCAAGAACCCGAATCAAGTGAGAAAGTGGAAGAATTTGCATGCTCAAGGTTTAACGTTGAATTTCCCATCTTCCAAAAGATTCGTGTCAACGGACCCAAAGCAGAACCTGTGTACAAGTTTCTTAAAGCCAAGAAAAGAGGGTTTTGCGGGTCAAGAATCAAATGGAACTTCACAAAGTTCCTTGTGGATAAAGAAGGCCGAGTCATAGGCCGTTATGGACCATCTACTTCACCATTATCCATCGAGGGTGATATTCAGAAGGCATTGAACGCGCAATGA 513 42.11 MGSAPSVPQNSIHEFTVKDCKGKDVDLSIYKGKVLLVVNVASKCGFTNSNYPKLAELYKRYKDKGLEILAFPCNQFLSQEPESSEKVEEFACSRFNVEFPIFQKIRVNGPKAEPVYKFLKAKKRGFCGSRIKWNFTKFLVDKEGRVIGRYGPSTSPLSIEGDIQKALNAQ 170
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01495 170 Gene3D Glutaredoxin 5 169 - -
Fra18g01495 170 PIRSF Glutathion-perox 2 170 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Fra18g01495 170 ProSiteProfiles Glutathione peroxidase profile. 2 170 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Fra18g01495 170 PANTHER GLUTATHIONE PEROXIDASE 8 168 IPR000889 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0005829(PANTHER)|GO:0006979(InterPro)
Fra18g01495 170 PRINTS Glutathione peroxidase family signature 30 47 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Fra18g01495 170 PRINTS Glutathione peroxidase family signature 66 82 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Fra18g01495 170 PRINTS Glutathione peroxidase family signature 131 140 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Fra18g01495 170 SUPERFAMILY Thioredoxin-like 11 167 IPR036249 -
Fra18g01495 170 CDD GSH-Peroxidase 11 163 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Fra18g01495 170 ProSiteProfiles Thioredoxin domain profile. 6 170 IPR013766 -
Fra18g01495 170 ProSitePatterns Glutathione peroxidases active site. 32 47 IPR029759 -
Fra18g01495 170 FunFam Glutathione peroxidase 3 169 - -
Fra18g01495 170 Pfam Glutathione peroxidase 12 120 IPR000889 GO:0004601(InterPro)|GO:0006979(InterPro)
Fra18g01495 170 ProSitePatterns Glutathione peroxidases signature 2. 69 76 IPR029760 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01495 K00432 glutathione peroxidase [EC:1.11.1.9]
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Event-related genes

Select Gene_1 Gene_2 Event_name
90705 Fra17g00808 Fra18g01495
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr17:26380676 Fra18g01495 Fra-Chr18:59676411 dispersed
Fra Fra-Chr18:59676411 Fra8g00407 Fra-Chr8:3470227 dispersed
Fra Fra-Chr18:59676411 Fra10g01751 Fra-Chr10:58342127 transposed