AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01510 ATGCTCAACATCTTCAACAAAAATCTCCGGCGACTCTGCTCAAAGCTCCGGTGGCCGGTGCGCCGCCGTGCAAAGCCCAAAGTCATCATCAAAAGATTCGGAAGATCAAATTCAAGAAATCAAGATTCTGTAAACACAAATGGGTCAGCCACAATTCACCCAAATAACCATTTGGGTGTTCAGAAATCAGAAAACCCAATTCGAATTGCAACATTTAATGCTGCTTTATTCTCAATGGCACCAGCAGTTCCAGAGTTGACCAAAAAAGCTTCAAGCTTTGACCATGGCGATGACGATGAAGATCACACAAAGGTAGACTCCAATTCCTCTGTTTCTTACAGTACTTCAAGGTCAAAATCAATGGTTGATCGACCCAAAAGTATATTGAAACAATCACCATTACATTCAAGCTCCATGAGCAGTTCAGAAGCTTTATCAAAACAGCAGAAATTCGCAAAGTCAAAGCTAAGAGTATCGATAAACTTACCTGATAATGAGATCTCATTGAAAAGAAGTGGGCAATTGAGCTTTGTTACCGACGAAAAAGAACCCGACCCGGGTTCAAGAACAAGTAGTTCTAAGGGAATTAGCAAGATTTTGAAAGGGAAAGGTGTTTTGAGATCACAAAACAGTGTTTCTTTAAGGGAAGATGAAAGTCAAAGGGGGACTTATAGGTCAACGAAGACTGTTCTTGAGGTTTTGAAAGAATTGAATGCTGATATATTGGCTTTACAAGATGTGAAAGCTGAAGAAGAGAAAGATATGAAACCATTGTCTGATCTTGCTGCTGCTTTGGGTATGAATTATGTGTTTGCTGAGAGTTGGGCACCCGAATATGGTAACGCTGTGTTGTCGAAGTGGCCGATCAAACGATCGAAGGTTCAGAAGATTTTTGATGATTCTGACTTCAGGAATGTTTTAAAGGCGACAATTGATGTTCCACAAACTGGAGAAGTTGATTTTCATTGTACGCTTCTTGATCATCTTGATGAAAATTGGCGAATGAAGCAAATAAAAGCAATCATCGAATCTAATGAGAGACCACACATCTTAGCTGGAGGTATCAACTCTCTTGATGAAACAGACTACTCGCCCGAAAGATGGACAGACATTGTTAAGTACTATGAAGAAATGGGAAAACCGACACCAAAAGTTGAAGTAATGAAGTACTTAAAAAGCAAACAGTACACTGATGCTAAGGATTTTGCAGGCGAATGTGAATCTGTAGTCATTATCGCAAAAGGCCAAAATGTGCAGGGTACATGCAAATATGGTACTAGGGTAGATTATATTTTGGTGTCGCCCGATTCACCTTATAAGTTCGTTCCTGGTTCATATATGGTTTTATCATCAAAAGGTACCTCTGACCATCACATAGTCAAAGTTGATGTAAGAAAGGTAGAAGAATCGGGTCAACAACACCACGTTAGAAGACATCGGCATCCTAAACAAAAAGTTGTGAAGATAACACATTCTAATTCATCAAAAGGAGCATGGAAAATGCAAACTTTAGATAGATAG 1521 39.45 MLNIFNKNLRRLCSKLRWPVRRRAKPKVIIKRFGRSNSRNQDSVNTNGSATIHPNNHLGVQKSENPIRIATFNAALFSMAPAVPELTKKASSFDHGDDDEDHTKVDSNSSVSYSTSRSKSMVDRPKSILKQSPLHSSSMSSSEALSKQQKFAKSKLRVSINLPDNEISLKRSGQLSFVTDEKEPDPGSRTSSSKGISKILKGKGVLRSQNSVSLREDESQRGTYRSTKTVLEVLKELNADILALQDVKAEEEKDMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRSKVQKIFDDSDFRNVLKATIDVPQTGEVDFHCTLLDHLDENWRMKQIKAIIESNERPHILAGGINSLDETDYSPERWTDIVKYYEEMGKPTPKVEVMKYLKSKQYTDAKDFAGECESVVIIAKGQNVQGTCKYGTRVDYILVSPDSPYKFVPGSYMVLSSKGTSDHHIVKVDVRKVEESGQQHHVRRHRHPKQKVVKITHSNSSKGAWKMQTLDR 506
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01510 506 SUPERFAMILY DNase I-like 228 464 IPR036691 -
Fra18g01510 506 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 15 463 IPR051916 GO:0005783(PANTHER)|GO:0006506(PANTHER)
Fra18g01510 506 MobiDBLite consensus disorder prediction 90 106 - -
Fra18g01510 506 FunFam Endonuclease-exonuclease-phosphatase family protein 215 467 - -
Fra18g01510 506 Coils Coil 234 254 - -
Fra18g01510 506 MobiDBLite consensus disorder prediction 107 122 - -
Fra18g01510 506 Gene3D Endonuclease-exonuclease-phosphatase 210 467 IPR036691 -
Fra18g01510 506 MobiDBLite consensus disorder prediction 90 146 - -
Fra18g01510 506 MobiDBLite consensus disorder prediction 36 59 - -
Fra18g01510 506 Pfam Endonuclease-Exonuclease-phosphatase family 221 457 IPR005135 GO:0003824(InterPro)
Fra18g01510 506 MobiDBLite consensus disorder prediction 130 146 - -
Fra18g01510 506 MobiDBLite consensus disorder prediction 173 196 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01510 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
393626 Fra13g01398 Fra18g01510
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr8:6230131 Fra18g01510 Fra-Chr18:59935283 transposed
Fra Fra-Chr13:42246438 Fra18g01510 Fra-Chr18:59935283 wgd