AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01519 ATGGAGTCACCTCACGCACCCATGCGATCAATCAAGCTATGGCCACCGAGCCACACCACACGGGTCCTGCTCGTTAATCGAATCGTAAAATGCTTCACAACCCCATCAATTTTGACAAGAAAGTACGGTCTTTTAAGCAAAGAAGAAGCAGAGGAAGAAGCTAAACAAATCGAATCTGCAGGCTTTATTGCAGCATCCCAACAATTCGAAAAAGACCCCGAAAGCGACGGTGGATCCGCTGTTCAAGTTTACGCGAAAGAATCGAGTAAATTGATGGTTGAATTCATCAAAACAGGGCCCAAACCGAAGGAATCCATGCCCGAATTGATCAAATCGGATCATGTTTTCGATATTTCAGGCGGTCGTCGGGCGTTTATCGAAGCCGAAGAGGCGAAAGAGCTGTTGAAACCGTTGAAAGAGCCCGGGAACAAGTTTACAAAGATATGTTTTAGTAACCGAAGTTTCGGGTTGCCTGCAGCCCATGTCGCTGCATCGGTGTTATCGGGGGTTAAAGATCAGTTAACCGAGGTTGATTTATCGGACATTGTATCGAGGAGGCCCGAGCCCGAAGCCGTTGAGGTTATGAAGATGTTTGCATCGGCTCTTGAGGGTTGTAAGTTGAGTTATTTGAATTTGTCTAACAATGTGTTGAATGAGAAAGGGGTTAGGGCATTTGGGGATCTTTTGAGGTCTCAAGGTGGTCTTGTGGAGTTGTATTTGATGAATGCCGGGATCTCGCCCGAAGCCGCGAAGGCGGTTTGTGAGTTGGTTCGGGCGACGGATAAACTTAAGGTTCTTCATTTTCATCATAATAGGATGGGAGACGAAGGCGCGATCGCCATTTCTCAACTTGTGAAAGGATCGTCGAATCTTGAGGATTTCAGGTGTTCCTCAACACGAGTCGGGTCAGCAGGGGGGATCGCACTAGCCGAAGCATTGAAAACTTGTACCCTTTTGAAGAAACTTGACTTACGTGACAACATGTTCGGATCAAAAGCCGGGGTTGCATTGAGTAATAACCTGTCCATGCACGCTAATCTCACGGAAATTTACCTTAGTTACTTGAATTTGGAAGACGAAGGGACTATCGCGATAGCGAATGCTCTAAAAACCTCCAAATCACCCCTCGAAGTCATCGAGATGGCGGGAAACAACATTACTTTCGAAGGGGCAAAAGGTTTAGCTGATTGCATGGTTTCAAAGAAACATTCTCTAACCAAAATAAACTTATCCGAGAATGAACTAAAGGACGAAGGTGCCATCGCGATCGGGAAGGCGCTCGAAGATAATTTTGAACGATTGTGCATCGTTAATTTGAGTGCAAACAAGATCAAAATAGATGGAGCTATGTCGTTGTCTAAAGCAGTTGTCGGAAAATTAGGGTTTCGACTGCTAAATATTAATGGAAACTATTTATCTGATAAAGGGATTGAGGGTGTTAGAGAGATCTTTAAGGACTTTCCTCGTATGCTCGGGCCTCTTGATGAGAATGATCCTCATGGTGAAGATGGTAACGATAAAAATGGTCGTGACAGTGTCAACGGACTTGAATCGAGTAAAAAATAA 1566 44.76 MESPHAPMRSIKLWPPSHTTRVLLVNRIVKCFTTPSILTRKYGLLSKEEAEEEAKQIESAGFIAASQQFEKDPESDGGSAVQVYAKESSKLMVEFIKTGPKPKESMPELIKSDHVFDISGGRRAFIEAEEAKELLKPLKEPGNKFTKICFSNRSFGLPAAHVAASVLSGVKDQLTEVDLSDIVSRRPEPEAVEVMKMFASALEGCKLSYLNLSNNVLNEKGVRAFGDLLRSQGGLVELYLMNAGISPEAAKAVCELVRATDKLKVLHFHHNRMGDEGAIAISQLVKGSSNLEDFRCSSTRVGSAGGIALAEALKTCTLLKKLDLRDNMFGSKAGVALSNNLSMHANLTEIYLSYLNLEDEGTIAIANALKTSKSPLEVIEMAGNNITFEGAKGLADCMVSKKHSLTKINLSENELKDEGAIAIGKALEDNFERLCIVNLSANKIKIDGAMSLSKAVVGKLGFRLLNINGNYLSDKGIEGVREIFKDFPRMLGPLDENDPHGEDGNDKNGRDSVNGLESSKK 521
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01519 521 Gene3D WPP domain 10 106 IPR038214 -
Fra18g01519 521 Pfam Leucine Rich repeat 262 282 IPR001611 GO:0005515(InterPro)
Fra18g01519 521 Pfam Leucine Rich repeat 316 338 IPR001611 GO:0005515(InterPro)
Fra18g01519 521 Pfam Leucine Rich repeat 205 225 IPR001611 GO:0005515(InterPro)
Fra18g01519 521 Pfam Leucine Rich repeat 402 423 IPR001611 GO:0005515(InterPro)
Fra18g01519 521 SUPERFAMILY RNI-like 125 500 - -
Fra18g01519 521 MobiDBLite consensus disorder prediction 491 521 - -
Fra18g01519 521 SMART LRR-RI-2 288 315 - -
Fra18g01519 521 SMART LRR-RI-2 316 343 - -
Fra18g01519 521 SMART LRR-RI-2 459 486 - -
Fra18g01519 521 SMART LRR-RI-2 402 429 - -
Fra18g01519 521 SMART LRR-RI-2 344 371 - -
Fra18g01519 521 SMART LRR-RI-2 204 231 - -
Fra18g01519 521 SMART LRR-RI-2 232 259 - -
Fra18g01519 521 SMART LRR-RI-2 431 458 - -
Fra18g01519 521 SMART LRR-RI-2 373 400 - -
Fra18g01519 521 SMART LRR-RI-2 260 287 - -
Fra18g01519 521 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 6 510 IPR045203 GO:0005096(InterPro)
Fra18g01519 521 Gene3D Ribonuclease Inhibitor 107 497 IPR032675 -
Fra18g01519 521 Pfam WPP domain 10 104 IPR025265 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01519 K14319 Ran GTPase-activating protein 1
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
89169 Fra11g00689 Fra18g01519
393623 Fra13g01394 Fra18g01519
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fra Fra-Chr11:6681720 Fra18g01519 Fra-Chr18:60082446 wgd
Fra Fra-Chr13:42186009 Fra18g01519 Fra-Chr18:60082446 wgd